Plant FIBer expression Database

Potri.019G091700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G58110 226 / 9e-63 unknown protein
AT2G42370 220 / 4e-61 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G119700
[exp]
1137 / 0 AT3G58110 388 / 5e-123 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039903
[exp]
479 / 4e-158 AT3G58110 394 / 3e-126 unknown protein
Lus10002186
[exp]
465 / 1e-153 AT3G58110 404 / 5e-131 unknown protein
PFAM info
Representative CDS sequence
>Potri.019G091700.1 pacid=42773272 polypeptide=Potri.019G091700.1.p locus=Potri.019G091700 ID=Potri.019G091700.1.v4.1 annot-version=v4.1
ATGGCCTCGTCTCCTTCTCTCCCTCAAGATCCAAACCCACACTCAAACTCTCTCTCTCAAAACCCTAACATCCCTAACCCAGATCAAATTCAAGAAACTT
TACCTGATGATGATGCCCAATTTCCCAAAACCCTTACCCTAGAAATCCCAAACCCTAACCCACAAGAAGATGACCCAACAAACCAAAACCACGACGACTT
TGAAGACCTCTCGACTTTTTCTCCCGCCACCACCGCTGCCTCCCGTCGTGGCGTTGGTGGCCGGAAAGGCAGAAAGGCTAGCAAAAAACGACGCGTGCAG
GTTAAAAAGTTAGAAAAAAAGCTTGAAACTTTAAGCCAATCCCTAAAACCAATCCCCTTTGTGCCCAACAAAGCCCTTGACTTTGCTTCCCATGAAACCC
TTTTGAAAAAATTGGGTTTGTGGGATTTTGTGCACTTGCAATTTGATACTCTTCTTCGTGCTGATTTGCTTGCTCAATTGATTGCTGGTTATAACCCTGC
GATGCGGGGTAGTTATGTTAATGAGATTAAAATTATGGTGAATCGGGCTGATTTAGGGCGTGCTTTGAAGTTGCCCGTGAAGAAAGATAAGGGGAATGTA
GGAGATGGGGCATCTGAGGTGAAGGAGAGTGCGGAGTCAATTGGGTTTATAGAGGAGTTGGTTTCGAATTGGATTTTGTTACATGAGGATACTTGGATGA
TGCCGCCAGATATATTGAACTGGATTAAATTGATTAAAGAAGGGAACTTTGAGAAGTTGGATTGGGCTGGAATGGTTTGGTATATGGTGGAGAAAGAGTT
GAATGCAGTGCCTAGTTTAGGGAATTGTTATTATGCGTCGCATTTGCAATGTTTGATAAAATGCCAGAGAGAGGAGTTGTTGAAGGAGGAGAGTGTTAAA
ATAGAGATTGATGCTAAGGAAGGCGAGGAGGAGGAGGGTTTGAAGATGGAGGAAGGTTTGAAGACGGAGGAGGTTGTGAAGATGGATGATGATGTGAAGA
TGGTTGATGAGTTTAGAGGTGAATCCTCTGTGTTAGAGGAACATAAAATTGAGTTGAGTCTTGGAGGGATGGATAATGCAGGGAAGGAAGAGGGTGAGAA
AGAGGGAGAGGGGAAGGAGATTGTTTGTGATGAGGACGTGATGGGTTTTGAACAGAGGAAAGAGGAAGAAGATCAGGGTCAGTGGAGAAAGATCAGCATG
GATGGGCATTTTCTGCAGCCGTGTAGTCTTAGTCAAGTTGGGGGAATGGAATGTGAGGAAGAGAGGAAACAGCAGGTTGAGGTGGACGGAGAGGAAGAGG
GAAAGGGAGGGGAGGAAGGAGAAGAAGAGGAGGCAGAGGAGGAGGCAAGGGAGGAGGTAGAGGAGGAGGAGTTGGAGGAGGAGGCGGAAGAAGAGGATGA
TGATGATGTTGGCTTTCATATTTCATCCAAAAGGAGTATTTTGGAGGGTGTAAGCTCTGAGAATCTTCTAGAGGCAATGGGAGCAGCTCAAGTTCCTTTT
AGTTCAGGGGTCCAAATTCATGATAATGTATCATCAGGGGAGTTTCTTGTTTCTAGGGTTAATACAGAGACAATTCCTGGTGGTTCTTCACTTTTTGGTA
ATGTTGGCGGGAGCAAGAGGGTGATTGACCATCTTGAGAGCGATATTCCTCATCACTCACTTGGTGGTGGTAGTAAAAGGATGAGAAGTGATGGGCATTG
GGATACAAAGCCTTACTCGGACTTTGATATGTTTGAGGAGGAGATGCAGCATATGATGGGAAAAGCTAGGATGATGATGGAGCAGAAGGAACAGTCATGT
CAGCAAATGAGTATGCATCAACAGGTGTTGTTTGATGAGTTGCAGCAGCGTGATAACTTCATTCAGCAATTGCAGAAGGCCAAGATGGAAGAGCAGCGGA
AAAGCCAGTTGGAAGTTTATAGGCTTGAACGTGAACTATATATGATGGGAAATCTCTTAGAGGGCTATAGAAAGGCTTTGAAGGAGACGCACAAGGCATT
TGCTGAGTACAGAGTAAAATGCCAACTACCTGAAGAACCGATTTACAAGGATACTGGGTCTGGAGGTCTTGTGTTGAGTACCACAGAATTGGAGAAGCAA
CGCCTGAAGCAAGAGGAAGAAGAAAGGTTAAACTGTGTATTGCTTGAGAAGATGGTTAAGGAATTTGAAGTAGAGTGCATTCCTAAGTTTGAAGGATATG
AGGACACCATTAAGTTACTGGATGACAAGTTGCTGCTTGTTGAGAAGAAATTCAACCTCCTGAAGGAAATTTTTGGAGAGCGAAAGGCATTAGATATGTC
AGAATGTGTTGCCACTGAGGACTGTATTCCAGCTAAAGAATCTGTTCCAACTGATGAATCTGTTCCAGCTGAAGAATATGTTCCAGCTGAAGAATCTGTT
CCAGCTGAAGAAGGTGCTCCTGCTGAAGAATGTGATCCAATGGAAGAATGTGCTCCTGCTGAAGAATGTGATCCAATGGAAGAATGTGTTCCAATGGAAG
AATGTGTTCCAATAGAAGGATGA
AA sequence
>Potri.019G091700.1 pacid=42773272 polypeptide=Potri.019G091700.1.p locus=Potri.019G091700 ID=Potri.019G091700.1.v4.1 annot-version=v4.1
MASSPSLPQDPNPHSNSLSQNPNIPNPDQIQETLPDDDAQFPKTLTLEIPNPNPQEDDPTNQNHDDFEDLSTFSPATTAASRRGVGGRKGRKASKKRRVQ
VKKLEKKLETLSQSLKPIPFVPNKALDFASHETLLKKLGLWDFVHLQFDTLLRADLLAQLIAGYNPAMRGSYVNEIKIMVNRADLGRALKLPVKKDKGNV
GDGASEVKESAESIGFIEELVSNWILLHEDTWMMPPDILNWIKLIKEGNFEKLDWAGMVWYMVEKELNAVPSLGNCYYASHLQCLIKCQREELLKEESVK
IEIDAKEGEEEEGLKMEEGLKTEEVVKMDDDVKMVDEFRGESSVLEEHKIELSLGGMDNAGKEEGEKEGEGKEIVCDEDVMGFEQRKEEEDQGQWRKISM
DGHFLQPCSLSQVGGMECEEERKQQVEVDGEEEGKGGEEGEEEEAEEEAREEVEEEELEEEAEEEDDDDVGFHISSKRSILEGVSSENLLEAMGAAQVPF
SSGVQIHDNVSSGEFLVSRVNTETIPGGSSLFGNVGGSKRVIDHLESDIPHHSLGGGSKRMRSDGHWDTKPYSDFDMFEEEMQHMMGKARMMMEQKEQSC
QQMSMHQQVLFDELQQRDNFIQQLQKAKMEEQRKSQLEVYRLERELYMMGNLLEGYRKALKETHKAFAEYRVKCQLPEEPIYKDTGSGGLVLSTTELEKQ
RLKQEEEERLNCVLLEKMVKEFEVECIPKFEGYEDTIKLLDDKLLLVEKKFNLLKEIFGERKALDMSECVATEDCIPAKESVPTDESVPAEEYVPAEESV
PAEEGAPAEECDPMEECAPAEECDPMEECVPMEECVPIEG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G58110 unknown protein Potri.019G091700
[exp]
0 1
Potri.005G043750
[exp]
2.64 0.8893
AT3G58050 unknown protein Potri.006G194500
[exp]
3.00 0.8446
AT5G04290 SPT5L, KTF1 SPT5-LIKE, kow domain-containi... Potri.008G032800
[exp]
4.58 0.8691
AT3G24490 Trihelix Alcohol dehydrogenase transcri... Potri.001G179800
[exp]
4.89 0.8447
AT5G16780 MDF, DOT2 MERISTEM-DEFECTIVE, DEFECTIVEL... Potri.001G082100
[exp]
5.65 0.8882
AT1G21651 zinc ion binding (.1) Potri.019G066500
[exp]
6.92 0.8537
AT2G35540 DNAJ heat shock N-terminal dom... Potri.003G097800
[exp]
8.94 0.8587
AT2G32910 DCD (Development and Cell Deat... Potri.013G029200
[exp]
12.64 0.7412
AT1G21200 Trihelix sequence-specific DNA binding ... Potri.001G019200
[exp]
14.17 0.7573
AT3G54980 Pentatricopeptide repeat (PPR)... Potri.006G250700
[exp]
14.89 0.7885

Potri.019G091700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.