Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29120 298 / 2e-89 ATGLR2.7 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) AT5G27100 295 / 5e-89 ATGLR2.1 ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.1, glutamate receptor 2.1 (.1) AT2G24710 294 / 2e-88 ATGLR2.3 glutamate receptor 2.3 (.1) AT2G29100 293 / 4e-88 ATGLR2.9 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) AT2G24720 293 / 8e-88 ATGLR2.2 glutamate receptor 2.2 (.1) AT2G29110 281 / 3e-83 ATGLR2.8 glutamate receptor 2.8 (.1) AT5G11210 272 / 9e-81 ATGLR2.5 ARABIDOPSIS THALIANA GLU, glutamate receptor 2.5 (.1) AT5G11180 273 / 2e-80 ATGLR2.6 ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.6, glutamate receptor 2.6 (.1) AT4G31710 258 / 2e-75 ATGLR2.4 ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.4, glutamate receptor 2.4 (.1) AT3G51480 233 / 4e-66 ATGLR3.6 glutamate receptor 3.6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G374600 [exp] 436 / 1e-142 AT2G29120 452 / 9e-145 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.001G375200 [exp] 421 / 7e-137 AT2G29120 436 / 8e-139 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.001G374300 [exp] 420 / 1e-136 AT2G29120 422 / 1e-133 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.001G374700 [exp] 418 / 7e-136 AT2G29120 446 / 1e-142 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.001G375000 [exp] 418 / 8e-136 AT2G29120 415 / 1e-130 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.001G375100 [exp] 417 / 2e-135 AT2G29120 419 / 3e-132 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.001G374800 [exp] 417 / 3e-135 AT2G29120 426 / 6e-135 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.004G052600 [exp] 354 / 1e-110 AT2G29100 392 / 3e-121 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) Potri.004G052400 [exp] 348 / 3e-108 AT2G29100 429 / 3e-135 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038670 [exp] 358 / 5e-110 AT3G10490 441 / 5e-143 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) Lus10026235 [exp] 280 / 7e-83 AT2G29120 912 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10003436 [exp] 278 / 4e-82 AT2G29120 867 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10013952 [exp] 251 / 8e-73 AT2G29120 377 / 1e-116 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10020109 [exp] 250 / 6e-72 AT2G29120 822 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10026913 [exp] 247 / 1e-71 AT2G29120 790 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10027170 [exp] 226 / 1e-63 AT2G32400 970 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) Lus10013976 [exp] 225 / 2e-63 AT2G29110 372 / 1e-114 glutamate receptor 2.8 (.1) Lus10039672 [exp] 223 / 1e-62 AT2G32400 969 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) Lus10039671 [exp] 222 / 5e-62 AT1G05200 1239 / 0.0 glutamate receptor 3.4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0177 [poplar] [flax] PBP PF00497 [poplar] [flax] SBP_bac_3 Bacterial extracellular solute-binding proteins, family 3 CL0144 [poplar] [flax] Periplas_BP PF13458 [poplar] [flax] Peripla_BP_6 Periplasmic binding protein
Representative CDS sequence Show only first row Show all	>Potri.019G091800.2 pacid=42774215 polypeptide=Potri.019G091800.2.p locus=Potri.019G091800 ID=Potri.019G091800.2.v4.1 annot-version=v4.1 ATGATTCCATCTAGAAAACTGCGAGTCCTCTTGATCCTCTTTCTATCATCTTCTTTGTCGAATGGAATGTCTAAAGTAGACAGTGTTGATCCTTTTGCCA TGGGAAACAAACCTCGCAAATTCAGTTTAGGTGGTATTGTAGATTGCACAACTCGTGCCGGGAAAGAAGAGAGAGTGGCCATGGAGATGGCACTGCAGGA CTTTTACAGCAACGCTACCCAGCGGCCCCGACTGTGTGTCAAAGACTCGAAAGGGGATTCCTTCCGAGCAGCCTCCTCTGCTAAAACACTTATCAAAAAG CACAATGTAGAAGCTATTATAGGCTTGGGAACTTCTCAAGAGGCTATCCTTGTTGCTGAGCTTGGCAACAGGTATGAAGTCCCTATCCTTTCGATGGTAA ATGAAGTTCCAGTTTGGGCCTCTTTACGTTGGCCTTTTCTGATTAATGCAGCTCGCAACCAGCTCTCACAGATGAAAGCTATAGCAGCTATAGTTCAGAG TTGGCAATGGCGGAGAGTAAATGTCATTTATGAAGAAAACAAAATTAATAGCATCATACCACATCTCTTCGCTGCTCTTCAAGATGCAGATGCAGAAATC AGTGAACTACTGCCTTTCCCCCCCTCACCTCCATACCGTTTTTTATCTGAAAAACTGGTGTCTCTTAGAAACGGGCAGTGCCGGGTGTTCATCGTTCACA CTAGTGCAACACTGGCGAGAATCATTTTCAGGGAAGCGAAGAAATTGGAAATGATGGAAGAAGAATATGTATGGATCACCACAGACTCCACATCAGACTA TTTTGATACATTTAATAATTCGGTCCTTTCATCAATGCAAGGTGCCTTGGGTGTTAAAAGCTACATTTCCAGTTCCAGTAAAAGAATCAAAGATTTTCGC TCAAGATTTCAGGTGATGTTCAGCTCTCAATTTCCTGAAGAGCCATTTCCAGAGCCAGGGATTTCTGCCTTACAGGCCTATGATGCAACGTGGGCTGTTG CTCTTGCAATGGAAGGAAGACCAAGTTCGAAAAGGTTCGGAAATTCTACAAGTATCACTCCTAAAGCTTCAATGGGTGGAACAAGTTTGTTGAACAGAAT CTTAGCTTCTAAATTTGAGGGCTTAACTGGTCATATATGTTTTATAAATGGCATGTTGCATCCTGCGGCACGAATCTTTACTCTAGTCAATGTTGTAGGG ATAAGTACTGAACTCGGGTATTGGACTGACGGCTATGGTTTCTCAAAGACTGTTGGTGCAAACATCCATTACAACAAGTCAATAACAGTTTTAAGGCAGA TCATTTGGCCTGGAGGGCCTTGGTCAGCTCCTCGCGGATGGGCATCAGCAGCAGGGGGCAAGAGACTAAAAATAGTAGTTCCATCAGGAAATAGTCACAA AGAATTCGTAAAAGTATCATATGATGGTCCTGGGGGTAGTATAAGAGTTACAGGATTTGTAATTGATGTCTTCAACGCCACTCTCTCTCGGTTGCCCTAT GCTTTGCCATGTGATTTCACCGGGTATGATGGCTCCTATGATGCCTTGGTATACCAAGTTTATAATCGGTCTTTTGATGCAGCAATAGGAGACACGGCCA TTTTGGCCAACCGTAGTAAATATGCAGAGTTCTCTCAACCTTTCACTGAGCCAGGTGTGCAGATGGTGGTGTATCAGGAAAGTAAGAAAATAAATAAAGT TCGGTTGTTCTTGAAGCCATTTACAGGAAAATTGTGGATCAGCATTGCAGCCATTACTTTGTATAATGGATTTGTTGTATGGTTGATCGAACGGCAGAAA GATAATCCAGATTTCAGTGGCTCTTGGTGGAAACAAATTTCAACCATGCTTTCAACATCTTTCATTACACTTTTTTAA
AA sequence Show only first row Show all	>Potri.019G091800.2 pacid=42774215 polypeptide=Potri.019G091800.2.p locus=Potri.019G091800 ID=Potri.019G091800.2.v4.1 annot-version=v4.1 MIPSRKLRVLLILFLSSSLSNGMSKVDSVDPFAMGNKPRKFSLGGIVDCTTRAGKEERVAMEMALQDFYSNATQRPRLCVKDSKGDSFRAASSAKTLIKK HNVEAIIGLGTSQEAILVAELGNRYEVPILSMVNEVPVWASLRWPFLINAARNQLSQMKAIAAIVQSWQWRRVNVIYEENKINSIIPHLFAALQDADAEI SELLPFPPSPPYRFLSEKLVSLRNGQCRVFIVHTSATLARIIFREAKKLEMMEEEYVWITTDSTSDYFDTFNNSVLSSMQGALGVKSYISSSSKRIKDFR SRFQVMFSSQFPEEPFPEPGISALQAYDATWAVALAMEGRPSSKRFGNSTSITPKASMGGTSLLNRILASKFEGLTGHICFINGMLHPAARIFTLVNVVG ISTELGYWTDGYGFSKTVGANIHYNKSITVLRQIIWPGGPWSAPRGWASAAGGKRLKIVVPSGNSHKEFVKVSYDGPGGSIRVTGFVIDVFNATLSRLPY ALPCDFTGYDGSYDALVYQVYNRSFDAAIGDTAILANRSKYAEFSQPFTEPGVQMVVYQESKKINKVRLFLKPFTGKLWISIAAITLYNGFVVWLIERQK DNPDFSGSWWKQISTMLSTSFITLF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Potri.019G091800 [exp]	0	1
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Potri.011G077320 [exp]	4.00	0.9227
AT2G16900			Arabidopsis phospholipase-like...		Potri.004G176100 [exp]	9.21	0.8917
AT4G37160		SKS15	SKU5 similar 15 (.1)		Potri.007G038200 [exp]	9.79	0.9137
AT3G60650			unknown protein		Potri.014G060400 [exp]	11.95	0.8957
AT5G07010		ATST2A	ARABIDOPSIS THALIANA SULFOTRAN...		Potri.001G036600 [exp]	14.31	0.9089
					Potri.002G122200 [exp]	14.69	0.9019
					Potri.018G122600 [exp]	15.74	0.9122
AT1G14540			Peroxidase superfamily protein...		Potri.008G022700 [exp]	17.14	0.9059
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Potri.019G125600 [exp]	20.34	0.9073
					Potri.018G119000 [exp]	27.20	0.8702

Compare expression of checked genes

Potri.019G091800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.