Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58120 285 / 4e-95 bZIP ATBZIP61 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT2G42380 278 / 1e-92 bZIP ATBZIP34 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2) AT1G43700 90 / 2e-20 bZIP SUE3, AtbZIP51, VIP1 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) AT1G58110 91 / 3e-20 bZIP Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2) AT1G06850 84 / 1e-18 bZIP ATBZIP52 basic leucine-zipper 52 (.1.2) AT4G38900 85 / 5e-18 bZIP AtbZIP29 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) AT1G06070 84 / 6e-18 bZIP AtbZIP69 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT2G40620 83 / 9e-18 bZIP AtbZIP18 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT2G21230 83 / 3e-17 bZIP AtbZIP30 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) AT2G31370 81 / 4e-17 bZIP AtbZIP59, PosF21 Basic-leucine zipper (bZIP) transcription factor family protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G124400 [exp] 424 / 5e-150 AT3G58120 293 / 2e-98 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.001G374200 [exp] 258 / 2e-84 AT3G58120 282 / 6e-94 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.009G074900 [exp] 93 / 3e-22 AT2G42380 87 / 3e-20 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2) Potri.019G130000 [exp] 91 / 2e-20 AT2G40620 289 / 4e-95 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.005G190700 [exp] 90 / 3e-20 AT1G43700 219 / 2e-69 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Potri.002G069500 [exp] 89 / 5e-20 AT1G43700 238 / 4e-76 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Potri.013G091400 [exp] 89 / 6e-20 AT2G40620 300 / 2e-100 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.003G014800 [exp] 89 / 9e-20 AT1G58110 304 / 3e-101 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2) Potri.009G075000 [exp] 88 / 1e-19 AT2G42380 91 / 1e-20 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017656 [exp] 283 / 1e-94 AT2G42380 305 / 1e-103 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2) Lus10033630 [exp] 271 / 1e-89 AT2G42380 294 / 7e-99 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2) Lus10002185 [exp] 207 / 3e-65 AT3G58120 219 / 1e-71 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10039902 [exp] 174 / 6e-53 AT3G58120 181 / 8e-56 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10028595 [exp] 89 / 9e-20 AT1G43700 289 / 1e-96 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Lus10018899 [exp] 89 / 9e-20 AT1G43700 287 / 7e-96 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Lus10029773 [exp] 88 / 1e-19 AT1G43700 311 / 6e-105 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Lus10008605 [exp] 88 / 1e-19 AT2G40620 276 / 1e-90 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10042802 [exp] 88 / 2e-19 AT1G43700 313 / 1e-105 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Lus10024204 [exp] 87 / 2e-19 AT1G06850 271 / 5e-90 basic leucine-zipper 52 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [poplar] [flax] bZIP PF00170 [poplar] [flax] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Potri.019G091900.1 pacid=42773017 polypeptide=Potri.019G091900.1.p locus=Potri.019G091900 ID=Potri.019G091900.1.v4.1 annot-version=v4.1 ATGGCACAATTACCTCCAAAAATACCAAACGTGACACCAAGTTGGCCCGATTTTTCTCATAAAAAATTACCAATAATTGGCATTATGGAGACATCACCAC CCCGTGATGCTAATATCATCACCGCCATTGTTACAAACCCTTCGTGGGTTGACGAATTTCTCGGCTTCTCGTCGACGAGACGTGGGACACATAGGAGGTC GGTGAGTGACTCCATTGCATTCCGGGAAGAAGCACCAACGATGTTAGAGAAATGTCGTGCCACGGGTGCACCGGGATTAGGGTCGGGACATAACAGCAGC ACTGACTTTGACAAGTTTGATGATGAACAGCTTATGTCCATGTTTAACGATGATATCTCCAATGCCGTGGCAGCTCCTAATTCTAGCTCCACACCTTCTT CGCCGTCTGATCACAACAGCATTAATGATGAGAAAGAAGCTATAGTAGTGGCGTCTAAGCATAAGCAGCAGCAGAAGGTGAGGAATGAGAATGATGAAGG GCAAAGTCCATCTGAATGGGAGACACCGACTACTGTCCCAACTGCCACCGATCCTGCTGCTACTTCTAATGAACGGAAAATCGATCCCAGGAGAGTTAAG AGAATCTTGGCAAACAGACAATCTGCTCAAAGATCACGGGTGAGAAAGCTGCAGTACATATCTGAGCTTGAACGCTGTGTAACATCATTGCAAGGTGAAG TTTCAGTGTTGTCACCAAGGGTTGCATATCTAGACCATCAAAGGTTGCTTCTAAATGTTGACAACAGTGCTCTTAAGCAAAGAATCGCTGCACTGGCTCA AGATAAGATTTTCAAAGATGCTCATCAAGAAGCATTGAAGAGGGAAATAGAGAGGCTAAGGCAAGTGTACCATCAACAGAACCTCAAGATGGAAAATACT TCACCACCATCAGCATCATCAACCCCATCAAATGACCCCACAACTCCTACTACCGATAAAGAACAGCAGCTATTTCAAGTTTAG
AA sequence Show only first row Show all	>Potri.019G091900.1 pacid=42773017 polypeptide=Potri.019G091900.1.p locus=Potri.019G091900 ID=Potri.019G091900.1.v4.1 annot-version=v4.1 MAQLPPKIPNVTPSWPDFSHKKLPIIGIMETSPPRDANIITAIVTNPSWVDEFLGFSSTRRGTHRRSVSDSIAFREEAPTMLEKCRATGAPGLGSGHNSS TDFDKFDDEQLMSMFNDDISNAVAAPNSSSTPSSPSDHNSINDEKEAIVVASKHKQQQKVRNENDEGQSPSEWETPTTVPTATDPAATSNERKIDPRRVK RILANRQSAQRSRVRKLQYISELERCVTSLQGEVSVLSPRVAYLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIERLRQVYHQQNLKMENT SPPSASSTPSNDPTTPTTDKEQQLFQV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G58120	bZIP	ATBZIP61	Basic-leucine zipper (bZIP) tr...		Potri.019G091900 [exp]	0	1
AT3G48550			unknown protein		Potri.012G097901 [exp]	1.00	0.8920
AT4G33800			unknown protein		Potri.001G292100 [exp]	4.47	0.8908
AT4G04930		DES-1-LIKE	fatty acid desaturase family p...		Potri.011G050800 [exp]	6.70	0.8433
AT3G20820			Leucine-rich repeat (LRR) fami...		Potri.003G207000 [exp]	11.31	0.8506	Pt-PGI.2
AT4G31590		ATCSLC5, ATCSLC...	CELLULOSE-SYNTHASE LIKE C5, Ce...		Potri.018G009300 [exp]	19.69	0.8671
AT1G01120		KCS1	3-ketoacyl-CoA synthase 1 (.1)		Potri.014G104300 [exp]	23.17	0.8774
AT3G20820			Leucine-rich repeat (LRR) fami...		Potri.001G017500 [exp]	26.45	0.8634	Pt-PGI.1
AT5G47500		PME5	pectin methylesterase 5, Pecti...		Potri.003G076900 [exp]	33.57	0.8508
AT4G18030			S-adenosyl-L-methionine-depend...		Potri.003G087600 [exp]	36.64	0.7793
AT1G11545		XTH8	xyloglucan endotransglucosylas...		Potri.004G021000 [exp]	37.97	0.8271

Compare expression of checked genes

Potri.019G091900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.