Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14300 449 / 2e-159 ARM repeat superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G124050 [exp] 556 / 0 AT1G14300 462 / 2e-164 ARM repeat superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036742 [exp] 483 / 1e-172 AT1G14300 498 / 1e-178 ARM repeat superfamily protein (.1.2) Lus10037185 [exp] 446 / 4e-157 AT1G14300 464 / 3e-164 ARM repeat superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04063 [poplar] [flax] DUF383 Domain of unknown function (DUF383)
Representative CDS sequence Show only first row Show all	>Potri.019G092000.2 pacid=42774389 polypeptide=Potri.019G092000.2.p locus=Potri.019G092000 ID=Potri.019G092000.2.v4.1 annot-version=v4.1 ATGGCCACGGAGCTTGAAGAACTGGTGGGCTTTCTTTCCTCTCCTTCCCCACCTGTGAAGAAGGCAGCTGTTGAAATAGTTCGAGACTTAACTGGATCCG AGGATGGGTTACTGTCTCTTTCCAAGTATGCCAGTACTATGCTTCCTTCATTATCTCAGCTTCTTAAGGATAAAAAGGAGGTTTCTGAACCTGCAGCAGA AGCTCTTATTAATCTTTCACTCAACTCGAATTTAGCTGCAAAGATGGTTGAAATGGGGATGATTAAAGCAGCCATGGATGTATTGTATAAACCAGATAGT AGCATTACTCGGTTGCTGGTAATGCTACTAGTTAACCTTACTCAATTGGATTCTGGTATTGTTTCCTTGCTTCAGATTGAGGATGAGAAGATGCAAGGGC TATTTGTTATGAAGCTGGTGAGATCATTTTGTAGATCCTCTGACGAAACTAGAGATGATCCGTTTGATCATGTTGGTTCCATTCTTGTGAACATTTCGAA GAAAGAAGCTGGAAGGAAGATGTTACTAGACTCTAAGAGAGGGTTGCTGAAGCAGATTCTCCGACAATTTGATTCAACAAGTCCATTACGGAAGAAAGGG GTTTTTGGAACACTCCGCAACTGTTGTTTTGAAGCTGAGAATCAACTTCAGAATTTGCTTTTGATATCTGAGTTTCTTTGGCCAGCTCTACTTCTTCCTG TTGCTGGTAAAAGGATATATAGTGAAGAAGATGCATCAAAAATGCCTCTTGAGCTTGGCAATGTACTCTCCTTTGAGCGTGAACCATGGGATGATCCTGA AATTCGTGTTGAAGCATTGGAATCTATATACTTAATCACAGTGCAGGAGGCAGGTCTAAGAGCCTTTTGGTCTATGAATGGACCACGTATATTACAATTT TGGTACGAAGACGAGGAAGATCCTAAAGTAATGGAAGCTTATGAGCGAGTTGGCTCGTTGCTGGTTCATGGCAGTGAGACATCAAAATGA
AA sequence Show only first row Show all	>Potri.019G092000.2 pacid=42774389 polypeptide=Potri.019G092000.2.p locus=Potri.019G092000 ID=Potri.019G092000.2.v4.1 annot-version=v4.1 MATELEELVGFLSSPSPPVKKAAVEIVRDLTGSEDGLLSLSKYASTMLPSLSQLLKDKKEVSEPAAEALINLSLNSNLAAKMVEMGMIKAAMDVLYKPDS SITRLLVMLLVNLTQLDSGIVSLLQIEDEKMQGLFVMKLVRSFCRSSDETRDDPFDHVGSILVNISKKEAGRKMLLDSKRGLLKQILRQFDSTSPLRKKG VFGTLRNCCFEAENQLQNLLLISEFLWPALLLPVAGKRIYSEEDASKMPLELGNVLSFEREPWDDPEIRVEALESIYLITVQEAGLRAFWSMNGPRILQF WYEDEEDPKVMEAYERVGSLLVHGSETSK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G14300			ARM repeat superfamily protein...		Potri.019G092000 [exp]	0	1
AT4G14746			unknown protein		Potri.010G082500 [exp]	2.00	0.7792
AT3G47490			HNH endonuclease (.1.2.3)		Potri.009G004200 [exp]	11.22	0.7670
AT3G62620			sucrose-phosphatase-related (....		Potri.002G198200 [exp]	13.41	0.7251
AT5G63890		HISN8, ATHDH	HISTIDINE BIOSYNTHESIS 8, hist...		Potri.001G465300 [exp]	14.49	0.7228
AT4G36290		CRT1	compromised recognition of TCV...		Potri.005G118400 [exp]	14.49	0.7074
AT4G15950		RDM2, NRPE4, NR...	RNA-DIRECTED DNA METHYLATION 2...		Potri.016G003200 [exp]	20.56	0.7508
AT5G08380		ATAGAL1	alpha-galactosidase 1 (.1)		Potri.010G255200 [exp]	26.15	0.7034
AT5G60160			Zn-dependent exopeptidases sup...		Potri.015G092700 [exp]	30.03	0.7190
AT1G27000			Protein of unknown function (D...		Potri.008G149000 [exp]	33.94	0.7068
AT1G30540			Actin-like ATPase superfamily ...		Potri.014G143500 [exp]	38.15	0.7111

Compare expression of checked genes

Potri.019G092000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.