Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06280 140 / 3e-41 AS2 LBD2 LOB domain-containing protein 2 (.1) AT3G50510 101 / 3e-26 AS2 LBD28 LOB domain-containing protein 28 (.1) AT3G13850 98 / 2e-24 AS2 LBD22 LOB domain-containing protein 22 (.1) AT1G16530 96 / 2e-24 AS2 ASL9, LBD3 LOB DOMAIN-CONTAINING PROTEIN 3, ASYMMETRIC LEAVES 2-like 9 (.1) AT1G31320 95 / 4e-24 AS2 LBD4 LOB domain-containing protein 4 (.1) AT3G26660 93 / 7e-24 AS2 LBD24 LOB domain-containing protein 24 (.1) AT3G26620 93 / 7e-24 AS2 LBD23 LOB domain-containing protein 23 (.1) AT5G66870 97 / 1e-23 AS2 LBD36, ASL1 LATERAL ORGAN BOUNDARIES DOMAIN GENE 36, ASYMMETRIC LEAVES 2-like 1 (.1) AT3G47870 96 / 2e-23 AS2 ASL29, SCP, LBD27 SIDECAR POLLEN, ASYMMETRIC LEAVES 2-like 29, LOB domain-containing protein 27 (.1) AT2G30130 94 / 2e-23 AS2 PCK1, LBD12, ASL5 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G123900 [exp] 251 / 2e-84 AT1G06280 135 / 2e-39 LOB domain-containing protein 2 (.1) Potri.006G228301 [exp] 111 / 4e-29 AT1G31320 111 / 1e-29 LOB domain-containing protein 4 (.1) Potri.018G052700 [exp] 109 / 5e-29 AT3G13850 85 / 1e-19 LOB domain-containing protein 22 (.1) Potri.005G097800 [exp] 103 / 6e-28 AT1G31320 193 / 6e-64 LOB domain-containing protein 4 (.1) Potri.007G066700 [exp] 103 / 6e-28 AT1G31320 216 / 3e-73 LOB domain-containing protein 4 (.1) Potri.003G149000 [exp] 102 / 5e-27 AT1G31320 241 / 2e-82 LOB domain-containing protein 4 (.1) Potri.001G081400 [exp] 101 / 1e-26 AT1G31320 228 / 3e-77 LOB domain-containing protein 4 (.1) Potri.014G167100 [exp] 96 / 2e-24 AT1G07900 144 / 7e-44 LOB domain-containing protein 1 (.1) Potri.001G345700 [exp] 95 / 3e-24 AT3G27650 208 / 5e-70 LOB domain-containing protein 25 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031769 [exp] 101 / 1e-26 AT1G31320 193 / 8e-64 LOB domain-containing protein 4 (.1) Lus10005284 [exp] 102 / 2e-26 AT2G30130 99 / 1e-25 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) Lus10040638 [exp] 100 / 3e-26 AT1G31320 244 / 1e-83 LOB domain-containing protein 4 (.1) Lus10031191 [exp] 100 / 4e-26 AT1G31320 199 / 2e-66 LOB domain-containing protein 4 (.1) Lus10017431 [exp] 100 / 4e-26 AT2G30130 199 / 1e-65 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) Lus10018275 [exp] 99 / 9e-26 AT1G31320 243 / 2e-83 LOB domain-containing protein 4 (.1) Lus10007525 [exp] 98 / 3e-25 AT2G30130 204 / 1e-67 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) Lus10023434 [exp] 97 / 5e-25 AT3G26660 131 / 5e-40 LOB domain-containing protein 24 (.1) Lus10009930 [exp] 98 / 1e-24 AT2G30340 230 / 5e-76 LOB domain-containing protein 13 (.1) Lus10033843 [exp] 96 / 1e-24 AT1G07900 143 / 8e-44 LOB domain-containing protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03195 [poplar] [flax] LOB Lateral organ boundaries (LOB) domain
Representative CDS sequence Show only first row Show all	>Potri.019G092201.1 pacid=42773788 polypeptide=Potri.019G092201.1.p locus=Potri.019G092201 ID=Potri.019G092201.1.v4.1 annot-version=v4.1 ATGCAAAGAGAGAATAACAGCGACAATAATAACAATCGTACGCTGGTTCATCCGGCATGCGCATCGTGCAAGCATCAACGGAAGAGGTGCACGGAGGATT GTGCATTGGCACCGTATTTTCCAGCAGAGAAAACCCAAGAATTTCAAGCTGTTCATAAAGTTTTTGGTGTTAGCAATGTTGTTAAATTAGTGAAAGATGT CAGTGAAGAGAGGCGAAAAGAGACGGCGGATTCATTGGTTTGGGAGGCTCTTTGTAGGCAAAATGATCCGGTTTCAGGCTGTTATGGGAAGTTCAAGAGA TTAAAGGAAGAGCTTGACTTGTACAAAACTCAACATCCGTCGCTAAACCAAAACCAAAATGGACAGCAGCAGGGGGGCGTAGTGTATAACAAACAGTCTC CGGTGATGGTTTACGGGATAAATAATAGGGCGAACGGTATTGGAGGAGGAGGATTAGCTAACAATAACATGGTAAGTTATGGCCATGATAATGAGAATTT GATTGCTGACTCAATCCAGCATAATTTTCATTGGGATTATGTGCAAAGTCTAGATAAATCAAAGCGCGAAAGAGATGCTAGTTCTCTTCTTCTTCCATCA CCACCGCCGTTGCCACATCACTATTCCATCAATGGATTTAATCAACAACAATACTATCTTCCAGGCGAATTTGGTTCAATGGAAAGCACACTCTTCATGG GAGAAGAAGATGGACACCATAGTTCCTTGTAG
AA sequence Show only first row Show all	>Potri.019G092201.1 pacid=42773788 polypeptide=Potri.019G092201.1.p locus=Potri.019G092201 ID=Potri.019G092201.1.v4.1 annot-version=v4.1 MQRENNSDNNNNRTLVHPACASCKHQRKRCTEDCALAPYFPAEKTQEFQAVHKVFGVSNVVKLVKDVSEERRKETADSLVWEALCRQNDPVSGCYGKFKR LKEELDLYKTQHPSLNQNQNGQQQGGVVYNKQSPVMVYGINNRANGIGGGGLANNNMVSYGHDNENLIADSIQHNFHWDYVQSLDKSKRERDASSLLLPS PPPLPHHYSINGFNQQQYYLPGEFGSMESTLFMGEEDGHHSSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G06280	AS2	LBD2	LOB domain-containing protein ...		Potri.019G092201 [exp]	0	1

Compare expression of checked genes

Potri.019G092201 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.