Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75840 337 / 1e-119 ATROP4, ATGP3, AT1G75840.1, ARAC5 RHO-LIKE GTP BINDING PROTEIN 4, ARABIDOPSIS THALIANA GERANYLGERANYLATED PROTEIN 3, RAC-like GTP binding protein 5 (.1) AT2G17800 337 / 2e-119 ARAC1, ATGP2, ATRAC1, ROP3, AtROP3 RHO-RELATED GTPASES FROM PLANTS 3, Arabidopsis RAC-like 1 (.1.2) AT1G20090 336 / 2e-119 ROP2, ARAC4, ATROP2, ATRAC4 Arabidopsis RAC-like 4, RHO-related protein from plants 2 (.1) AT5G45970 335 / 6e-119 ATRAC2, ATROP7, ARAC2 RHO-RELATED PROTEIN FROM PLANTS 7, ARABIDOPSIS THALIANA RAC 2, Arabidopsis RAC-like 2, RAC-like 2 (.1) AT3G51300 333 / 2e-118 ATRAC11, ROP1, ARAC11, ROP1AT, AtROP1 ARABIDOPSIS THALIANA RHO-RELATED PROTEIN FROM PLANTS 1, Arabidopsis RAC-like 11, RHO-related protein from plants 1 (.1) AT4G35950 333 / 3e-118 ATRAC6, ATROP5, ARAC6, RAC2, AtROP7 RAC-like 2, RHO-RELATED PROTEIN FROM PLANTS 5, RAC-like 6 (.1) AT4G35020 330 / 9e-117 ROP6, ARAC3, RHO1PS, ATROP6 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) AT3G48040 314 / 2e-110 ROP10, ARAC8, ATROP10, ATRAC8 Arabidopsis RAC-like 8, RHO-related protein from plants 10 (.1) AT5G62880 313 / 6e-110 ARAC10, ATRAC10, AtROP11 RHO-RELATED PROTEIN FROM PLANTS 11, ARABIDOPSIS THALIANA RAC-LIKE 10, RAC-like 10 (.1) AT4G28950 297 / 1e-103 ATRAC7, ARAC7, ATROP9, ROP9 Arabidopsis RAC-like 7, RHO-related protein from plants 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G123800 [exp] 361 / 3e-129 AT1G75840 342 / 1e-121 RHO-LIKE GTP BINDING PROTEIN 4, ARABIDOPSIS THALIANA GERANYLGERANYLATED PROTEIN 3, RAC-like GTP binding protein 5 (.1) Potri.011G061500 [exp] 342 / 8e-122 AT5G45970 344 / 1e-122 RHO-RELATED PROTEIN FROM PLANTS 7, ARABIDOPSIS THALIANA RAC 2, Arabidopsis RAC-like 2, RAC-like 2 (.1) Potri.009G134600 [exp] 341 / 3e-121 AT1G75840 353 / 5e-126 RHO-LIKE GTP BINDING PROTEIN 4, ARABIDOPSIS THALIANA GERANYLGERANYLATED PROTEIN 3, RAC-like GTP binding protein 5 (.1) Potri.005G242000 [exp] 340 / 8e-121 AT1G75840 359 / 2e-128 RHO-LIKE GTP BINDING PROTEIN 4, ARABIDOPSIS THALIANA GERANYLGERANYLATED PROTEIN 3, RAC-like GTP binding protein 5 (.1) Potri.004G174900 [exp] 338 / 3e-120 AT4G35020 360 / 8e-129 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) Potri.002G019500 [exp] 336 / 3e-119 AT1G75840 352 / 1e-125 RHO-LIKE GTP BINDING PROTEIN 4, ARABIDOPSIS THALIANA GERANYLGERANYLATED PROTEIN 3, RAC-like GTP binding protein 5 (.1) Potri.005G110700 [exp] 335 / 8e-119 AT2G17800 365 / 8e-131 RHO-RELATED GTPASES FROM PLANTS 3, Arabidopsis RAC-like 1 (.1.2) Potri.007G061500 [exp] 335 / 8e-119 AT2G17800 365 / 8e-131 RHO-RELATED GTPASES FROM PLANTS 3, Arabidopsis RAC-like 1 (.1.2) Potri.015G073000 [exp] 319 / 3e-112 AT5G62880 354 / 7e-126 RHO-RELATED PROTEIN FROM PLANTS 11, ARABIDOPSIS THALIANA RAC-LIKE 10, RAC-like 10 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015298 [exp] 337 / 2e-119 AT5G45970 347 / 9e-124 RHO-RELATED PROTEIN FROM PLANTS 7, ARABIDOPSIS THALIANA RAC 2, Arabidopsis RAC-like 2, RAC-like 2 (.1) Lus10033131 [exp] 336 / 4e-119 AT4G35020 361 / 4e-129 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) Lus10034538 [exp] 334 / 2e-118 AT4G35020 359 / 2e-128 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) Lus10014123 [exp] 329 / 3e-116 AT4G35020 354 / 5e-126 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) Lus10019786 [exp] 328 / 8e-116 AT4G35020 355 / 1e-126 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) Lus10014258 [exp] 328 / 2e-115 AT3G51300 394 / 1e-141 ARABIDOPSIS THALIANA RHO-RELATED PROTEIN FROM PLANTS 1, Arabidopsis RAC-like 11, RHO-related protein from plants 1 (.1) Lus10039899 [exp] 327 / 2e-115 AT4G35020 324 / 1e-114 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) Lus10025959 [exp] 320 / 7e-113 AT2G17800 355 / 2e-126 RHO-RELATED GTPASES FROM PLANTS 3, Arabidopsis RAC-like 1 (.1.2) Lus10002181 [exp] 320 / 9e-113 AT4G35020 320 / 8e-113 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) Lus10028428 [exp] 317 / 2e-111 AT2G17800 347 / 3e-123 RHO-RELATED GTPASES FROM PLANTS 3, Arabidopsis RAC-like 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF08477 [poplar] [flax] Roc Ras of Complex, Roc, domain of DAPkinase
Representative CDS sequence Show only first row Show all	>Potri.019G092300.1 pacid=42773990 polypeptide=Potri.019G092300.1.p locus=Potri.019G092300 ID=Potri.019G092300.1.v4.1 annot-version=v4.1 ATGAGCACAGCTAGGTTCATCAAGTGTGTCACTGTTGGGGATGGAGCTGTTGGCAAGACATGCATGCTCATCTCTTACACAAGCAACACTTTCCCTACTG ATTATGTACCTACAGTGTTTGACAACTTCAGTGCTAATGTGGTGGTCCATGGCAGCACAGTGAATCTTGGATTATGGGATACTGCAGGACAGGAGGATTA TAACAGGTTGAGGCCTCTGAGTTATAGAGGTGCAGATGTGTTCTTGCTGGCCTTTTCTCTAATCAGCAAAGCTAGCTATGAGAACATTGCCAAGAAGTGG ATCTCTGAACTAAGGCATTATGCCCCAGCTGTGCCGATTGTGCTTGTGGGAACCAAACTTGATTTACGGAACGATAGGCAATATCTGATAGATCATCCTG GGGCCGCACCAATCACGACTGCTCAGGGGGAGGAACTAAAGAAGATGATCGGTGCTGCTGTTTACTTAGAGTGCAGCTCCAAGACTCAGCAGAATGTGAA GGGTGTCTTTGATGCTGCAATCAAGGTTGTTTTGCAGCCTCCGAAGCCGAAGAAAAGGAGACAGAAGCGTAGGGCTCCTTGTGTGTTTCTCTAA
AA sequence Show only first row Show all	>Potri.019G092300.1 pacid=42773990 polypeptide=Potri.019G092300.1.p locus=Potri.019G092300 ID=Potri.019G092300.1.v4.1 annot-version=v4.1 MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVHGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIAKKW ISELRHYAPAVPIVLVGTKLDLRNDRQYLIDHPGAAPITTAQGEELKKMIGAAVYLECSSKTQQNVKGVFDAAIKVVLQPPKPKKRRQKRRAPCVFL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G75840		ATROP4, ATGP3, ...	RHO-LIKE GTP BINDING PROTEIN 4...		Potri.019G092300 [exp]	0	1
AT2G17940			Plant protein of unknown funct...		Potri.005G114400 [exp]	1.00	0.9357
AT2G16700		ADF5, ATADF5	actin depolymerizing factor 5 ...		Potri.004G173800 [exp]	2.23	0.9208	Pt-ADF5.2
AT4G38050			Xanthine/uracil permease famil...		Potri.007G011400 [exp]	2.44	0.9180
AT5G47730			Sec14p-like phosphatidylinosit...		Potri.006G004000 [exp]	4.24	0.9304	Pt-SSH1.2
AT3G58460		ATRBL15	RHOMBOID-like protein 15 (.1.2...		Potri.006G197900 [exp]	6.32	0.9247
AT1G63430			Leucine-rich repeat protein ki...		Potri.003G124800 [exp]	6.48	0.9292
AT5G15900		TBL19	TRICHOME BIREFRINGENCE-LIKE 19...		Potri.017G110200 [exp]	7.93	0.9048
AT2G45300			RNA 3'-terminal phosphate cycl...		Potri.014G068300 [exp]	9.16	0.9122
AT1G48880		TBL7	TRICHOME BIREFRINGENCE-LIKE 7 ...		Potri.002G071900 [exp]	14.42	0.9119
AT3G08500	MYB	ATMYB83	myb domain protein 83 (.1)		Potri.009G061500 [exp]	15.00	0.8867

Compare expression of checked genes

Potri.019G092300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.