Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06290 1070 / 0 ATACX3, ACX3 acyl-CoA oxidase 3 (.1) AT1G06310 1034 / 0 ACX6 acyl-CoA oxidase 6 (.1) AT5G65110 341 / 2e-107 ATACX2, ACX2 acyl-CoA oxidase 2 (.1.2) AT3G06690 260 / 6e-83 acyl-CoA oxidases;oxidoreductases, acting on the CH-CH group of donors;FAD binding;oxidoreductases;acyl-CoA oxidases (.1) AT4G16760 237 / 9e-69 ATACX1, ACX1 acyl-CoA oxidase 1 (.1.2) AT2G35690 233 / 2e-67 ACX5 acyl-CoA oxidase 5 (.1) AT3G45300 42 / 0.001 IVDH, ATIVD, IVD isovaleryl-CoA-dehydrogenase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G123500 [exp] 1313 / 0 AT1G06290 1061 / 0.0 acyl-CoA oxidase 3 (.1) Potri.007G090400 [exp] 349 / 1e-110 AT5G65110 1203 / 0.0 acyl-CoA oxidase 2 (.1.2) Potri.005G077600 [exp] 346 / 1e-109 AT5G65110 1179 / 0.0 acyl-CoA oxidase 2 (.1.2) Potri.001G155500 [exp] 226 / 7e-65 AT4G16760 1152 / 0.0 acyl-CoA oxidase 1 (.1.2) Potri.003G079200 [exp] 223 / 2e-63 AT4G16760 1143 / 0.0 acyl-CoA oxidase 1 (.1.2) Potri.009G011700 [exp] 43 / 0.0006 AT3G45300 694 / 0.0 isovaleryl-CoA-dehydrogenase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039894 [exp] 1109 / 0 AT1G06290 1036 / 0.0 acyl-CoA oxidase 3 (.1) Lus10016249 [exp] 1014 / 0 AT1G06290 965 / 0.0 acyl-CoA oxidase 3 (.1) Lus10002177 [exp] 804 / 0 AT1G06290 754 / 0.0 acyl-CoA oxidase 3 (.1) Lus10041711 [exp] 337 / 6e-106 AT5G65110 1199 / 0.0 acyl-CoA oxidase 2 (.1.2) Lus10024038 [exp] 278 / 7e-84 AT5G65110 1122 / 0.0 acyl-CoA oxidase 2 (.1.2) Lus10004386 [exp] 234 / 2e-67 AT4G16760 1107 / 0.0 acyl-CoA oxidase 1 (.1.2) Lus10040183 [exp] 234 / 3e-67 AT4G16760 1051 / 0.0 acyl-CoA oxidase 1 (.1.2) Lus10004745 [exp] 229 / 1e-65 AT4G16760 1112 / 0.0 acyl-CoA oxidase 1 (.1.2) Lus10007815 [exp] 225 / 9e-65 AT4G16760 1019 / 0.0 acyl-CoA oxidase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0087 [poplar] [flax] Acyl-CoA_dh PF00441 [poplar] [flax] Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain CL0087 [poplar] [flax] Acyl-CoA_dh PF01756 [poplar] [flax] ACOX Acyl-CoA oxidase CL0087 [poplar] [flax] PF02770 [poplar] [flax] Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
Representative CDS sequence Show only first row Show all	>Potri.019G092600.1 pacid=42773865 polypeptide=Potri.019G092600.1.p locus=Potri.019G092600 ID=Potri.019G092600.1.v4.1 annot-version=v4.1 ATGGCACAAGAATCGTCAATCAACAGGGCTTCACGTAGAACCAGAATACTAAACAACCACCTAGTCCAATCTCCTTCAGACCCCACTTCATGTCTTCGAT CAAACTCTTGTTTAAGCTACACTCCACCAGAAGAAACTGAAAGTCTTGATTTCGACACCAAAGAAATGAGAAAAATTCTTGATCTCCACAACTTGGAGGA CAGGGACTGGTTGTTTGGTGTTATCAAACAAGGGAAAGTGTTTAATGGGAAAGAGAGAGGTGGGAGATTGTTTGTACTCCCTGAGTATAATCAGACAATG GAGCAGCAAAGAGAAATGACTATGAAAAGAATTGAGTATTTGTTTGAAAGAGGTGTTTTTGATGGATGGTTGATGAAAAAAGGGGTGGAAGCTGAATTGA AGAAGTTGGCTTTTCTTGACGTTATTCAGAATTTTGATCAGTCTCTTGCTGTCATGCTTGGTGTTCATTTCTTTTTATGGGGTGGTGCTATCCAGTTTAT GGGCACAAAGCGCCACCATGACAAGTGGCTAAGAGACACAGAAACTTTTGGACTGAAAGGATGCTTTTCTATGACGGAGTTGGGGCATGGAAGTAATGTT CGAGGAATTGAAACAGTCACAACTTATGATTTGAAGACAGGAGAGTTTGTAATCAATACTCCTTGTGAATCAGCTCAGAAGTATTGGATTGGGGGGGCTG CTAATCATGCAACACACACTATAGTCTTTTCTCAGCTCAACATAGATGGGGTGAATCAAGGAGTCCACGCCTTCATAGCCCAGATCAGGGATGCAGATGG AAACATATGCCCAAACATCCGTATTGCTGAATGCGGTCACAAAATTGGTTTGAATGGTGTTGATAATGGTCGAATCTGGTTTGACAATCTGAGAATCCCC AGAGAGAACTTGTTGAATTCGGTTGCTGATGTTTCACCAGATGGCCAATATCTGAGTGCAATAAAAGATCCGGATCAAAGGTTTGCAGCATTCTTGGCCC CTTTGACATCTGGTCGTGTAACTATTGCTACGAGTGCAGTTTTCTCATCAAAGGTTGGCTTGGCAACTGCCATTAGGTACTCCTTGAGTAGGCGGGCATT CTCTGTAACACCTAATGGACCTGAAGTCCTTTTGCTTGATTATCCAAGTCATCAACGACGACTCTTGCCTCTTCTTGCTAAGTCGTATGCTATGACTTTC GGTGGAAATTACTTGAAAATGACTTATGTGAATAGAACCCCTGGATCAGCCAAAACCCTTCATGTTGTTTCAAGTGCATTCAAGGCTATCTTTACCTGGC ACAACATGAGAACCCTCCAGGAATGTCGTGAAGCTTGTGGAGGACAAGGCTTGAAGACTGAAAATAAAATTGGTCACTTGAAAGGTGAATTTGATGTCCA GTCAACTTTTGAGGGGGACAATAATGTTCTCATGCAGCAGGTCAGCAAGGCACTCCTTTCAGAATATGCAGCAGCAAAGAAGAAAAATAAACCTTTCAAG GGTTTGGGATTAGAACACATGAATGGACCTGTCCCAGTAATTCCATCTAATCTCACAAGTAGTACCCTCAGGAGCAGCCAATTCCAGATGAATGCTTTCT GCTTGAGGGAGCGAGATCTTCTGAACCGTTTTGCTGCAGAAGTGTCACTTTATCAATCAAAGGGTGAAAGTAAAGAGCATGCATTTATTCTGAGTTATCA ACTTGCCGAAGACTTGGGCAGAGCTTTCTCAGACAGAGCTATTCTGCAGACCTTCATTGATGCTGAGGCAAATGTATCTGCTGGTTCCTTGAAGAATGTC TTGGGACTGTTGAGATCTATGTATGCCCTAATCTGTTTGGAAGAAGATGCTGCGTTTCTCCGGTATGGGTACTTATCGACAGACAATGCTGCTGCTGTGA GGAAAGAAGTAACAAAACTCTGCGGAGAATTGCGACCACATGCACTTGCATTGGTCAGTTCCCTCGGCATTCCTGATGCCTTTTTGGGCCCCATAGCATT TAACTGGATAGACGCGAATTCATGGTCTTCAGTTAAACACTAG
AA sequence Show only first row Show all	>Potri.019G092600.1 pacid=42773865 polypeptide=Potri.019G092600.1.p locus=Potri.019G092600 ID=Potri.019G092600.1.v4.1 annot-version=v4.1 MAQESSINRASRRTRILNNHLVQSPSDPTSCLRSNSCLSYTPPEETESLDFDTKEMRKILDLHNLEDRDWLFGVIKQGKVFNGKERGGRLFVLPEYNQTM EQQREMTMKRIEYLFERGVFDGWLMKKGVEAELKKLAFLDVIQNFDQSLAVMLGVHFFLWGGAIQFMGTKRHHDKWLRDTETFGLKGCFSMTELGHGSNV RGIETVTTYDLKTGEFVINTPCESAQKYWIGGAANHATHTIVFSQLNIDGVNQGVHAFIAQIRDADGNICPNIRIAECGHKIGLNGVDNGRIWFDNLRIP RENLLNSVADVSPDGQYLSAIKDPDQRFAAFLAPLTSGRVTIATSAVFSSKVGLATAIRYSLSRRAFSVTPNGPEVLLLDYPSHQRRLLPLLAKSYAMTF GGNYLKMTYVNRTPGSAKTLHVVSSAFKAIFTWHNMRTLQECREACGGQGLKTENKIGHLKGEFDVQSTFEGDNNVLMQQVSKALLSEYAAAKKKNKPFK GLGLEHMNGPVPVIPSNLTSSTLRSSQFQMNAFCLRERDLLNRFAAEVSLYQSKGESKEHAFILSYQLAEDLGRAFSDRAILQTFIDAEANVSAGSLKNV LGLLRSMYALICLEEDAAFLRYGYLSTDNAAAVRKEVTKLCGELRPHALALVSSLGIPDAFLGPIAFNWIDANSWSSVKH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G06290		ATACX3, ACX3	acyl-CoA oxidase 3 (.1)		Potri.019G092600 [exp]	0	1
AT5G10460			Haloacid dehalogenase-like hyd...		Potri.019G099100 [exp]	4.58	0.7929
AT2G45740		PEX11D	peroxin 11D (.1.2.3)		Potri.009G133900 [exp]	8.12	0.8228
AT4G39460		SAMC1, SAMT1	SAM TRANSPORTER1, S-adenosylme...		Potri.005G197200 [exp]	8.54	0.8459
AT3G51070			S-adenosyl-L-methionine-depend...		Potri.005G118100 [exp]	26.15	0.7298
AT4G19710		AK-HSDHII, AK-H...	aspartate kinase-homoserine de...		Potri.013G099500 [exp]	30.00	0.7706	HSDH.2
AT1G28960		ATNUDX15, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.011G063300 [exp]	32.40	0.7537
AT2G43360		BIOB, BIO2	BIOTIN AUXOTROPH B, BIOTIN AUX...		Potri.017G033300 [exp]	32.49	0.7698	Pt-BIO2.2
AT1G10417			unknown protein		Potri.008G190600 [exp]	33.94	0.7844
AT4G26550			Got1/Sft2-like vescicle transp...		Potri.014G170700 [exp]	41.02	0.7723
AT1G05490		CHR31	chromatin remodeling 31 (.1)		Potri.014G050200 [exp]	41.02	0.7700

Compare expression of checked genes

Potri.019G092600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.