Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35160 230 / 2e-72 O-methyltransferase family protein (.1) AT4G35150 205 / 1e-63 O-methyltransferase family protein (.1) AT5G54160 177 / 2e-52 ATOMT1 O-methyltransferase 1 (.1) AT1G51990 162 / 9e-47 O-methyltransferase family protein (.1.2) AT1G77520 141 / 1e-38 O-methyltransferase family protein (.1) AT1G63140 135 / 2e-36 O-methyltransferase family protein (.1.2) AT3G53140 135 / 3e-36 O-methyltransferase family protein (.1) AT5G53810 133 / 2e-35 O-methyltransferase family protein (.1) AT1G33030 129 / 3e-34 O-methyltransferase family protein (.1) AT1G21130 121 / 4e-31 IGMT4 indole glucosinolate O-methyltransferase 4, O-methyltransferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G093100 [exp] 573 / 0 AT4G35160 225 / 1e-70 O-methyltransferase family protein (.1) Potri.013G121300 [exp] 488 / 3e-174 AT4G35160 201 / 4e-61 O-methyltransferase family protein (.1) Potri.013G120800 [exp] 486 / 3e-173 AT4G35160 205 / 7e-63 O-methyltransferase family protein (.1) Potri.013G121400 [exp] 485 / 7e-173 AT4G35160 202 / 8e-62 O-methyltransferase family protein (.1) Potri.013G121900 [exp] 477 / 6e-170 AT4G35160 184 / 5e-55 O-methyltransferase family protein (.1) Potri.013G122400 [exp] 472 / 7e-168 AT4G35160 188 / 2e-56 O-methyltransferase family protein (.1) Potri.013G122000 [exp] 446 / 1e-157 AT4G35160 174 / 6e-51 O-methyltransferase family protein (.1) Potri.011G059600 [exp] 408 / 3e-142 AT4G35160 196 / 3e-59 O-methyltransferase family protein (.1) Potri.004G050500 [exp] 399 / 5e-139 AT4G35160 178 / 2e-52 O-methyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033656 [exp] 553 / 0 AT4G35150 211 / 8e-65 O-methyltransferase family protein (.1) Lus10017699 [exp] 534 / 0 AT4G35150 204 / 2e-62 O-methyltransferase family protein (.1) Lus10018628 [exp] 385 / 4e-133 AT4G35160 192 / 7e-58 O-methyltransferase family protein (.1) Lus10018629 [exp] 382 / 2e-132 AT4G35160 214 / 3e-66 O-methyltransferase family protein (.1) Lus10001510 [exp] 364 / 6e-125 AT4G35160 197 / 1e-59 O-methyltransferase family protein (.1) Lus10015311 [exp] 351 / 4e-120 AT4G35160 189 / 1e-56 O-methyltransferase family protein (.1) Lus10013945 [exp] 341 / 2e-116 AT4G35160 181 / 1e-53 O-methyltransferase family protein (.1) Lus10017691 [exp] 331 / 4e-112 AT4G35160 194 / 2e-58 O-methyltransferase family protein (.1) Lus10038331 [exp] 323 / 2e-106 AT4G35160 197 / 8e-58 O-methyltransferase family protein (.1) Lus10033653 [exp] 316 / 4e-106 AT4G35150 172 / 2e-50 O-methyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00891 [poplar] [flax] Methyltransf_2 O-methyltransferase domain CL0123 [poplar] [flax] HTH PF08100 [poplar] [flax] Dimerisation Dimerisation domain
Representative CDS sequence Show only first row Show all	>Potri.019G093000.1 pacid=42774233 polypeptide=Potri.019G093000.1.p locus=Potri.019G093000 ID=Potri.019G093000.1.v4.1 annot-version=v4.1 ATGATCAATTTGGCCGATGGAAAGCATGATCCTGAGCTACTTAAAGCTCAAGCTCATGTATGGAATCACATATTCAACTTCATAAACTCAATGTCTCTAA AATGTGCAATTGATCTAGGCATACCCGATATCATCAACAAACACAGCAAACCTGTGACCCTCCCTGAGCTCATTGCCGCCCTACCAGTCCACCCTAGCAA AGCTCGTTGTGTCCCTCGCCTCATGCGCTTGTTGATCCATTCTGGTTTCTTTGAGAAACAAAAGGTTAGCGAAGATGATCAAGAAGAGGGTTATGTTCTC ACCAATGCATCCCAGCTTCTCCTCAAGGACAATCCCTTTAGTGTAACACCATTCTTGCAAGCCATGCTTGACCCAATTTTAACAAAGCCATGGCATTTTG TGAGCACTTGGTTAAAAAATGATGATCCTACTCCATTTGACACGGCTCATGGGAGGACATTTTGGGACTATGGTGGCCATGAACCAATGCTTAACCATTT CTTTAATGATGCCATGGCTAGTGATGCTCGTTTGGTTACGAGAGTGTTAGTTAATGAATGCAAGGAGGTGTTTGAAGGGTTGGGTTCATTGGTGGATGTT GGAGGTGGCACCGGAACCGTGGCCAAGTCCTTAGCCAAAGCATTCCCACATTTGGATTGCACTGTATTCGATCTCCCACATGTGGTAGCTGATTTACAAG GCAGTGAAAACTTGAAATATGTTGGCGGAGACATGTTTGAGGCTATTCCTCCTGCAGATGGAATTGTACTAAAGTGGATTCTACATGACTGGAATGATGA AGAATGTGTTAGGATACTTAAGAAATGCAAGGAAGCAATCAAGGACAGGGAAGGAGGGAAGGTTATGATCATAGACATGATGATGGAGAACCAGAAAGGA GAAGACGAATCAATTGAAACACAAATATTCTTCGATATGCTCATGATGATTTTGGTCACTGGTCAAGAAAGAAATGAGAAAGAATGGGCTAAACTATTCT CTGATGCTGGTTTTAGCAACTTCAAGATAACTCCCATACTAGGTTTAAGGTCTATCATTGAAGTATTCCCTTGA
AA sequence Show only first row Show all	>Potri.019G093000.1 pacid=42774233 polypeptide=Potri.019G093000.1.p locus=Potri.019G093000 ID=Potri.019G093000.1.v4.1 annot-version=v4.1 MINLADGKHDPELLKAQAHVWNHIFNFINSMSLKCAIDLGIPDIINKHSKPVTLPELIAALPVHPSKARCVPRLMRLLIHSGFFEKQKVSEDDQEEGYVL TNASQLLLKDNPFSVTPFLQAMLDPILTKPWHFVSTWLKNDDPTPFDTAHGRTFWDYGGHEPMLNHFFNDAMASDARLVTRVLVNECKEVFEGLGSLVDV GGGTGTVAKSLAKAFPHLDCTVFDLPHVVADLQGSENLKYVGGDMFEAIPPADGIVLKWILHDWNDEECVRILKKCKEAIKDREGGKVMIIDMMMENQKG EDESIETQIFFDMLMMILVTGQERNEKEWAKLFSDAGFSNFKITPILGLRSIIEVFP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G35160			O-methyltransferase family pro...		Potri.019G093000 [exp]	0	1
AT5G51790	bHLH	bHLH120	basic helix-loop-helix (bHLH) ...		Potri.015G134400 [exp]	1.41	0.9379
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Potri.004G010850 [exp]	2.82	0.8743
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.003G025100 [exp]	3.74	0.8828
AT4G31980			unknown protein		Potri.003G208700 [exp]	3.87	0.9169
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.001G440200 [exp]	4.24	0.9189
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Potri.007G119400 [exp]	6.00	0.8738
AT4G31980			unknown protein		Potri.003G208750 [exp]	6.32	0.9078
AT5G11290			Plant protein of unknown funct...		Potri.003G208400 [exp]	7.21	0.9125
AT4G35160			O-methyltransferase family pro...		Potri.009G139800 [exp]	11.74	0.9020
AT2G37900			Major facilitator superfamily ...		Potri.017G145500 [exp]	17.32	0.8622

Compare expression of checked genes

Potri.019G093000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.