Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53690 157 / 1e-46 RING/U-box superfamily protein (.1) AT3G14250 150 / 3e-44 RING/U-box superfamily protein (.1) AT2G26135 113 / 3e-29 RING/U-box protein with C6HC-type zinc finger (.1) AT3G45540 109 / 5e-28 RING/U-box protein with C6HC-type zinc finger (.1) AT3G45580 109 / 9e-28 RING/U-box protein with C6HC-type zinc finger (.1) AT5G37560 108 / 3e-27 RING/U-box superfamily protein (.1) AT3G43750 100 / 8e-25 RING/U-box protein with C6HC-type zinc finger domain (.1) AT5G60250 100 / 4e-24 zinc finger (C3HC4-type RING finger) family protein (.1) AT2G26130 98 / 1e-23 RING/U-box protein with C6HC-type zinc finger (.1) AT2G25360 96 / 4e-23 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G123500 [exp] 410 / 5e-147 AT3G53690 163 / 1e-48 RING/U-box superfamily protein (.1) Potri.013G120300 [exp] 407 / 9e-146 AT3G53690 158 / 7e-47 RING/U-box superfamily protein (.1) Potri.003G187700 [exp] 162 / 9e-49 AT3G14250 242 / 8e-79 RING/U-box superfamily protein (.1) Potri.018G064400 [exp] 163 / 4e-48 AT3G53690 273 / 1e-89 RING/U-box superfamily protein (.1) Potri.001G037200 [exp] 155 / 4e-46 AT3G14250 240 / 3e-78 RING/U-box superfamily protein (.1) Potri.006G104700 [exp] 101 / 2e-24 AT5G60250 424 / 4e-141 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.015G117600 [exp] 95 / 2e-22 AT4G19670 661 / 0.0 RING/U-box superfamily protein (.1.2) Potri.012G119000 [exp] 90 / 2e-20 AT4G19670 622 / 0.0 RING/U-box superfamily protein (.1.2) Potri.009G150100 [exp] 82 / 6e-18 AT5G60250 378 / 6e-124 zinc finger (C3HC4-type RING finger) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000412 [exp] 147 / 2e-42 AT3G14250 228 / 9e-73 RING/U-box superfamily protein (.1) Lus10026104 [exp] 145 / 1e-41 AT3G14250 240 / 1e-77 RING/U-box superfamily protein (.1) Lus10024093 [exp] 137 / 2e-39 AT3G14250 209 / 2e-66 RING/U-box superfamily protein (.1) Lus10022063 [exp] 119 / 2e-32 AT3G53690 175 / 3e-53 RING/U-box superfamily protein (.1) Lus10038341 [exp] 102 / 1e-24 AT4G19670 607 / 0.0 RING/U-box superfamily protein (.1.2) Lus10036202 [exp] 99 / 2e-23 AT4G19670 624 / 0.0 RING/U-box superfamily protein (.1.2) Lus10036127 [exp] 94 / 1e-21 AT5G60250 338 / 9e-108 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10036128 [exp] 93 / 2e-21 AT5G60250 410 / 1e-136 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10042610 [exp] 80 / 3e-17 AT3G53690 113 / 9e-17 RING/U-box superfamily protein (.1) Lus10022064 [exp] 57 / 2e-10 AT3G14250 78 / 2e-18 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF01485 [poplar] [flax] IBR IBR domain, a half RING-finger domain
Representative CDS sequence Show only first row Show all	>Potri.019G093600.3 pacid=42773208 polypeptide=Potri.019G093600.3.p locus=Potri.019G093600 ID=Potri.019G093600.3.v4.1 annot-version=v4.1 ATGGGAAACACAATGCAAAAACCCCAAGGAACAGAAGTAGAAGGAACAGAACAGTTGCAACAAGAAGAAGATTCAAACTTTACTTGTGAAATTTGCTCCG ATCCTATGCTATCAACCAGAAATTTCAAGAATGGTATCGTGTGTAAACATCCATTCTGCTTGGATTGCATAACCAAATATATTGAAATAACAGTTGAGGA AACCTCTGGCTGCATTGAATGCCCTGGACTGAACTGCAAGCAACTGTTAGACCCTCTCTCATGCAGGCCTATCATCTCAAAACCAATATTTGAGAAATGG TGTGATCGTCTATGTGATTCAATGGTTTTAGGGTCTGAAAGTTGCTATTGCCCGTACCGAGATTGCTCAGTGTTGGTTTTGAATGAGTGTAAGGATAAGC TGAAAAAAATAAATTGTCCTAACTGCAAGAAAAATTTCTGTTTCCTATGCAAGATTCCTTGGCATACAGGATATCGGTGCAGTGAGAGCAGACATCTAAG AGATAGGAATGACATTCTGGCTGGTGAGTTGATTGAAGAGAAAAAGTGGACGAGATGTTATAATTGTAGTCACTCTGTTGAGCGAGTTAGTGGTTGCAGA GATATAAAATGCAGATGCGGGTTTCGGTTTTGCCATCAATGTGGAGGACCATTCCATTCTGGCCTTTGTAAGCACAAGCGCTGTGGATATGTTCTTTGCA ATCTTTTCATTTTTCGATGTTATTAG
AA sequence Show only first row Show all	>Potri.019G093600.3 pacid=42773208 polypeptide=Potri.019G093600.3.p locus=Potri.019G093600 ID=Potri.019G093600.3.v4.1 annot-version=v4.1 MGNTMQKPQGTEVEGTEQLQQEEDSNFTCEICSDPMLSTRNFKNGIVCKHPFCLDCITKYIEITVEETSGCIECPGLNCKQLLDPLSCRPIISKPIFEKW CDRLCDSMVLGSESCYCPYRDCSVLVLNECKDKLKKINCPNCKKNFCFLCKIPWHTGYRCSESRHLRDRNDILAGELIEEKKWTRCYNCSHSVERVSGCR DIKCRCGFRFCHQCGGPFHSGLCKHKRCGYVLCNLFIFRCY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G53690			RING/U-box superfamily protein...		Potri.019G093600 [exp]	0	1
AT2G01980		ATSOS1, SOS1, A...	ARABIDOPSIS SALT OVERLY SENSIT...		Potri.008G140700 [exp]	4.12	0.8378
AT2G02570			nucleic acid binding;RNA bindi...		Potri.004G229200 [exp]	6.40	0.8056
AT1G51550			Kelch repeat-containing F-box ...		Potri.008G006300 [exp]	7.07	0.8614
					Potri.004G170350 [exp]	7.07	0.8684
					Potri.017G035401 [exp]	8.83	0.8456
AT2G21070		FIO1	FIONA1, methyltransferases (.1...		Potri.009G131700 [exp]	9.38	0.8308
AT1G02860		BAH1, NLA	nitrogen limitation adaptation...		Potri.002G205400 [exp]	20.97	0.8020
AT3G14470			NB-ARC domain-containing disea...		Potri.014G003350 [exp]	21.44	0.8293
AT1G50410			SNF2 domain-containing protein...		Potri.014G005701 [exp]	22.60	0.8575
AT1G60690			NAD(P)-linked oxidoreductase s...		Potri.002G234000 [exp]	25.69	0.7947

Compare expression of checked genes

Potri.019G093600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.