Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54420 369 / 8e-130 ATCHITIV, CHIV, ATEP3 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) AT2G43590 323 / 4e-112 Chitinase family protein (.1) AT2G43580 296 / 3e-101 Chitinase family protein (.1) AT2G43570 268 / 3e-90 CHI "chitinase, putative", chitinase, putative (.1) AT2G43620 251 / 2e-83 Chitinase family protein (.1) AT2G43610 249 / 1e-82 Chitinase family protein (.1) AT3G47540 217 / 8e-71 Chitinase family protein (.1.2) AT1G56680 193 / 2e-60 Chitinase family protein (.1) AT2G43600 174 / 4e-53 Chitinase family protein (.1) AT3G12500 167 / 8e-50 PR-3, PR3, CHI-B, B-CHI, ATHCHIB PATHOGENESIS-RELATED 3, basic chitinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G125000 [exp] 395 / 4e-140 AT3G54420 421 / 1e-150 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.019G093700 [exp] 389 / 6e-138 AT3G54420 413 / 3e-147 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.019G093900 [exp] 387 / 9e-137 AT3G54420 360 / 3e-126 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.019G094100 [exp] 384 / 1e-135 AT3G54420 350 / 3e-122 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.013G125100 [exp] 379 / 5e-134 AT3G54420 336 / 1e-116 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.019G094000 [exp] 365 / 2e-128 AT3G54420 340 / 2e-118 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.004G182000 [exp] 178 / 3e-54 AT3G12500 460 / 5e-164 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.009G141700 [exp] 177 / 5e-54 AT3G12500 405 / 3e-142 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.014G111800 [exp] 163 / 8e-49 AT4G01700 422 / 1e-150 Chitinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000453 [exp] 345 / 2e-120 AT3G54420 382 / 3e-135 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Lus10003231 [exp] 254 / 2e-85 AT3G54420 241 / 2e-80 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Lus10003226 [exp] 256 / 2e-84 AT3G54420 269 / 2e-89 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Lus10024368 [exp] 252 / 2e-84 AT2G43590 264 / 2e-89 Chitinase family protein (.1) Lus10003587 [exp] 250 / 2e-83 AT2G43590 270 / 1e-91 Chitinase family protein (.1) Lus10010861 [exp] 249 / 4e-83 AT2G43590 263 / 6e-89 Chitinase family protein (.1) Lus10010862 [exp] 249 / 6e-83 AT2G43590 262 / 1e-88 Chitinase family protein (.1) Lus10032794 [exp] 246 / 5e-82 AT2G43590 265 / 6e-90 Chitinase family protein (.1) Lus10035625 [exp] 246 / 4e-81 AT3G54420 266 / 7e-89 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Lus10010866 [exp] 242 / 2e-80 AT3G54420 239 / 1e-79 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0037 [poplar] [flax] Lysozyme PF00182 [poplar] [flax] Glyco_hydro_19 Chitinase class I CL0037 [poplar] [flax] PF00187 [poplar] [flax] Chitin_bind_1 Chitin recognition protein
Representative CDS sequence Show only first row Show all	>Potri.019G093800.1 pacid=42773368 polypeptide=Potri.019G093800.1.p locus=Potri.019G093800 ID=Potri.019G093800.1.v4.1 annot-version=v4.1 ATGTTTTCTCTTAACATGGGAAACAATTTACTATCCATCATTCTGGCTATGATGCTGGCTGTAACCATGCCACAGTTGCTAATGTCTCAAAATTGTGGTT GTGCTCCCAACTTGTGCTGTAGTCAGTTTGGCTTCTGTGGCACCGGTGATGCTTATTGTGGCCAAGGATGTCGAGAGGGACCTTGTACCCCTAGCACGCC TAGTAACAATGATGTTACGGTGGCTGACGTTGTTACACCGGAATTCTTCAACGGTATAATCAATCAAGCCGGTGGAGATTGTGCCGGGAAGAGCTTCTAC ACACGAGATGCGTTTCTCAGTGCTCTCAATTCTTATTCTCAGTTTGGCAAGATTGGATCAAATGACGATTCCAAACGTGAGATTGCAGCATTTTTTGCTC ACGTCACGCATGAGACCGGACACTTCTGCTACATAGAAGAAATAAACGGTGCCTCTCATGACTACTGTGATGAGACCAATACACAGTATCCATGCAACCC GAACAAGAACTACTTTGGCCGTGGACCTCTTCAACTAACATGGAATTACAATTACGGGGCGGCTGGAGGGGCAAACAACTTTGATGGACTAAACTCTCCC GAAACTGTGGCCAATGATCCTGTTGTATCATTTAAGACTGCCTTATGGTTTTGGATGACTAATGTCCGCCCTGTGGTCACTCAAGGATTTGGTGCAACGA TTAGAGCCATTAATGGTGCAGTTGAATGTAATGGTGGAAATTCTGGTGCTGTTCAAGCTCGAATTGGGTATTACACAGATTATTGTAACCAGTTTGGCGT TGCACCTGGCGATAATCTAAGTTGTTAG
AA sequence Show only first row Show all	>Potri.019G093800.1 pacid=42773368 polypeptide=Potri.019G093800.1.p locus=Potri.019G093800 ID=Potri.019G093800.1.v4.1 annot-version=v4.1 MFSLNMGNNLLSIILAMMLAVTMPQLLMSQNCGCAPNLCCSQFGFCGTGDAYCGQGCREGPCTPSTPSNNDVTVADVVTPEFFNGIINQAGGDCAGKSFY TRDAFLSALNSYSQFGKIGSNDDSKREIAAFFAHVTHETGHFCYIEEINGASHDYCDETNTQYPCNPNKNYFGRGPLQLTWNYNYGAAGGANNFDGLNSP ETVANDPVVSFKTALWFWMTNVRPVVTQGFGATIRAINGAVECNGGNSGAVQARIGYYTDYCNQFGVAPGDNLSC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Potri.019G093800 [exp]	0	1
AT3G04120		GAPC1, GAPC-1, ...	glyceraldehyde-3-phosphate deh...		Potri.008G179300 [exp]	1.00	0.9879	GAPDH.1
AT5G24090		ATCHIA	chitinase A (.1)		Potri.012G033866 [exp]	3.46	0.9700
					Potri.008G163200 [exp]	6.48	0.9661
AT1G73260		ATKTI1	ARABIDOPSIS THALIANA KUNITZ TR...		Potri.007G111600 [exp]	8.00	0.9651
AT3G19615			unknown protein		Potri.001G294800 [exp]	12.40	0.9592
AT5G46940			Plant invertase/pectin methyle...		Potri.003G086500 [exp]	19.07	0.9711
AT1G17860			Kunitz family trypsin and prot...		Potri.001G309900 [exp]	24.89	0.9691
AT1G73260		ATKTI1	ARABIDOPSIS THALIANA KUNITZ TR...		Potri.004G000400 [exp]	34.89	0.9665
					Potri.001G268500 [exp]	40.76	0.9119
AT4G19810		ChiC	class V chitinase, Glycosyl hy...		Potri.006G188400 [exp]	43.47	0.9639

Compare expression of checked genes

Potri.019G093800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.