Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54420 350 / 3e-122 ATCHITIV, CHIV, ATEP3 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) AT2G43590 327 / 3e-113 Chitinase family protein (.1) AT2G43580 310 / 1e-106 Chitinase family protein (.1) AT2G43570 266 / 2e-89 CHI "chitinase, putative", chitinase, putative (.1) AT2G43610 261 / 3e-87 Chitinase family protein (.1) AT2G43620 258 / 6e-86 Chitinase family protein (.1) AT3G47540 214 / 1e-69 Chitinase family protein (.1.2) AT1G56680 189 / 6e-59 Chitinase family protein (.1) AT3G12500 179 / 2e-54 PR-3, PR3, CHI-B, B-CHI, ATHCHIB PATHOGENESIS-RELATED 3, basic chitinase (.1) AT2G43600 176 / 9e-54 Chitinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G093900 [exp] 464 / 2e-167 AT3G54420 360 / 3e-126 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.019G094000 [exp] 449 / 3e-161 AT3G54420 340 / 2e-118 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.013G125100 [exp] 406 / 1e-144 AT3G54420 336 / 1e-116 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.019G093800 [exp] 379 / 1e-133 AT3G54420 369 / 8e-130 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.013G125000 [exp] 351 / 1e-122 AT3G54420 421 / 1e-150 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.019G093700 [exp] 348 / 1e-121 AT3G54420 413 / 3e-147 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.009G141700 [exp] 189 / 9e-59 AT3G12500 405 / 3e-142 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.014G111800 [exp] 187 / 2e-58 AT4G01700 422 / 1e-150 Chitinase family protein (.1) Potri.004G182000 [exp] 181 / 3e-55 AT3G12500 460 / 5e-164 PATHOGENESIS-RELATED 3, basic chitinase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000453 [exp] 316 / 4e-109 AT3G54420 382 / 3e-135 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Lus10003587 [exp] 279 / 5e-95 AT2G43590 270 / 1e-91 Chitinase family protein (.1) Lus10010861 [exp] 278 / 2e-94 AT2G43590 263 / 6e-89 Chitinase family protein (.1) Lus10010862 [exp] 277 / 4e-94 AT2G43590 262 / 1e-88 Chitinase family protein (.1) Lus10024368 [exp] 276 / 5e-94 AT2G43590 264 / 2e-89 Chitinase family protein (.1) Lus10032794 [exp] 275 / 2e-93 AT2G43590 265 / 6e-90 Chitinase family protein (.1) Lus10003231 [exp] 271 / 5e-92 AT3G54420 241 / 2e-80 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Lus10003226 [exp] 274 / 2e-91 AT3G54420 269 / 2e-89 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Lus10035624 [exp] 272 / 9e-91 AT2G43590 246 / 5e-81 Chitinase family protein (.1) Lus10035625 [exp] 266 / 1e-88 AT3G54420 266 / 7e-89 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0037 [poplar] [flax] Lysozyme PF00182 [poplar] [flax] Glyco_hydro_19 Chitinase class I CL0037 [poplar] [flax] PF00187 [poplar] [flax] Chitin_bind_1 Chitin recognition protein
Representative CDS sequence Show only first row Show all	>Potri.019G094100.1 pacid=42773938 polypeptide=Potri.019G094100.1.p locus=Potri.019G094100 ID=Potri.019G094100.1.v4.1 annot-version=v4.1 ATGAGAAGCAATATTCTCCTTACCATTATCTTAGCCATAGTTCTTGCAGGAGCCCTGCCCAAGAATGTGGTAGAGGCTCAGAATTGTGGCTGTGCTGCAA ACCTTTGTTGCAGTCAATATGGCTACTGTGGCACTAGCAATGCCTATTGTGGTCAGGGATGTAAACAAGGGCCCTGTTATTCATCGCCTACGCCTACTAC CCCTAGTGGGAGTGGTTCTGTTGCTGATATTGTTACGCCTGGTTTCTTCAATGGTATAATCAGCCAAGCTGGTGCAGGCTGTGCTGGGAAGAATTTCTAT ACAAGAAATGCATTTCTCAGTGCTGTCAATTCATATCCTCAATTTGGTAAACTTGGTTCAGCTGAAGCTTCTAAGCGTGAGATTGCAGCTTTCTTCGCTC ATGTTACTCATGAGACTGGACACTTCTGCTATACAGAAGAGATAAATGGTGCTTCCCGTGACTACTGTGATGAAAACAACAGGCAATACCCATGTGTTCC AGGTAAGAAATACCATGGCCGCGGACCAATCCAACTATCATGGAACTACAACTATGGGCCAGCCGGAAGCAGCAACAACTTTGATGGATTGAACAATCCT GACATTGTAGCAAGGGATGCTGTTGTGTCATTTAAGACAGCCTTATGGTTTTGGATGAAAAGTGTTCGTCCTGTTGTAGGCCAAGGTTTTGGAGCAACTA TTCGAGCCATTAATGGTAATGAATGCAATGGTGGAAACTCAGGTGCTGTTCAGGCTCGTGTTAGATATTATAGAGATTATTGCAGTCAACTCGGCGTTTC TACTGAGAATAACCTCGCTTGCTAG
AA sequence Show only first row Show all	>Potri.019G094100.1 pacid=42773938 polypeptide=Potri.019G094100.1.p locus=Potri.019G094100 ID=Potri.019G094100.1.v4.1 annot-version=v4.1 MRSNILLTIILAIVLAGALPKNVVEAQNCGCAANLCCSQYGYCGTSNAYCGQGCKQGPCYSSPTPTTPSGSGSVADIVTPGFFNGIISQAGAGCAGKNFY TRNAFLSAVNSYPQFGKLGSAEASKREIAAFFAHVTHETGHFCYTEEINGASRDYCDENNRQYPCVPGKKYHGRGPIQLSWNYNYGPAGSSNNFDGLNNP DIVARDAVVSFKTALWFWMKSVRPVVGQGFGATIRAINGNECNGGNSGAVQARVRYYRDYCSQLGVSTENNLAC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Potri.019G094100 [exp]	0	1
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Potri.014G041900 [exp]	1.73	0.9080
AT4G38830		CRK26	cysteine-rich RLK (RECEPTOR-li...		Potri.011G029400 [exp]	2.44	0.8965
AT5G18470			Curculin-like (mannose-binding...		Potri.013G050500 [exp]	9.16	0.8916
AT1G24140			Matrixin family protein (.1)		Potri.013G033200 [exp]	15.32	0.8529
AT4G38830		CRK26	cysteine-rich RLK (RECEPTOR-li...		Potri.011G030400 [exp]	18.73	0.8332
AT1G07050			CCT motif family protein (.1)		Potri.009G077100 [exp]	19.33	0.8083
AT1G74220			unknown protein		Potri.015G057200 [exp]	20.78	0.8223
AT4G31980			unknown protein		Potri.003G208100 [exp]	21.44	0.8392
					Potri.001G019700 [exp]	21.97	0.7418
AT5G37690			SGNH hydrolase-type esterase s...		Potri.017G130100 [exp]	24.00	0.8642

Compare expression of checked genes

Potri.019G094100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.