Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29990 628 / 0 Leucine-rich repeat transmembrane protein kinase protein (.1) AT2G29000 615 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G19230 600 / 0 Leucine-rich repeat transmembrane protein kinase protein (.1) AT3G46400 594 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G51860 593 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G51850 592 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G05700 592 / 0 Leucine-rich repeat transmembrane protein kinase protein (.1) AT3G46350 590 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G51790 590 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G51820 588 / 0 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G094600 [exp] 1681 / 0 AT4G29990 636 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.019G094700 [exp] 1457 / 0 AT4G29990 652 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.019G094200 [exp] 835 / 0 AT4G29990 452 / 1e-150 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.019G094250 [exp] 508 / 7e-174 AT1G05700 184 / 8e-52 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.007G004700 [exp] 370 / 1e-113 AT2G37050 466 / 2e-149 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.006G132100 [exp] 290 / 3e-84 AT2G37050 1317 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.016G084900 [exp] 286 / 5e-83 AT2G37050 1276 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.010G052800 [exp] 275 / 1e-78 AT1G67720 1330 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G181200 [exp] 273 / 3e-78 AT1G67720 1339 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025849 [exp] 671 / 0 AT4G29990 803 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Lus10038251 [exp] 458 / 4e-149 AT4G29990 560 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Lus10019907 [exp] 397 / 8e-124 AT2G37050 1337 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10038172 [exp] 335 / 3e-101 AT5G48740 967 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10015057 [exp] 288 / 3e-83 AT2G37050 1316 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10038174 [exp] 276 / 5e-82 AT5G48740 793 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10023166 [exp] 284 / 7e-82 AT2G37050 1323 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10036935 [exp] 276 / 5e-79 AT1G67720 1303 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037051 [exp] 278 / 3e-78 AT1G67720 1293 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019237 [exp] 266 / 1e-75 AT2G37050 464 / 1e-148 Leucine-rich repeat protein kinase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0202 [poplar] [flax] GBD PF12819 [poplar] [flax] Malectin_like Malectin-like domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.019G094300.2 pacid=42773330 polypeptide=Potri.019G094300.2.p locus=Potri.019G094300 ID=Potri.019G094300.2.v4.1 annot-version=v4.1 ATGGATGGTGGGCAAATACTGCTTTCTTATATAAAAGTATGGGTGATCCTCCTTTTGCTCTCAGCTACGTTTCCGAACTCAAAACTTGCTGCCAAAAATA CTGAGCAGGATAAAAAAAGAAAGCTTGCTGCAGAAAACTCAGGCATCAGCATTGATTGTGGGGCGGATGAAGATTATACGGATAGGAATACTGGAATATC TTACAAAACCGACAAAGATTTCATTAGTACGGGCAAGAATAAGGTCGTAGCACCAGAGTATGACTTGACGAGTACTCTTTACTATGGGAAAATGGTGAAT AGCTTGAGAATCTTTCCTGAAGGTGATAGGAATTGTTATACATTGAAACCTAGAGAGGGTAAGAACCAAAACTATTACGTCAGAGCTTTCTTCCGCTATG GAAATTACGATTCTAAGAATCAAACTCAAATAAAGTTTGATCTATACATCGGGGTAAACTATTGGGCAACGGTTGAAGAAACTTTTGAAAATAAGTACTG GATAAATTACGACATTATTCATTATTCAGTAACTGATACCATTTATGTGTGTCTCGTAAATACGGGTTTCGGAGTTCCTTTCATCAGTGGATTGGATTTA CTGTTCATGAATGATTCCTCGTATAGAAGTATGAATGGATCGTTGCTTCGCAGGGTGCAAGCTGACCTTGGCGGCGAGGTCAGCTTAGGCACCATAAGGT ACCCCGATGACGTGTATGCTCGCATCTGGCAGCTTGACGTCAACCTCACCGATTCAGTTTCAAATATTAGCACCGAAGCAATTACAAATATTGATATCCA GGGCAGTGATAATCGCTGCCGTCTACCAGTCGAAGTCTTGAGAACAGCGGTTCAGCCTCGAAATGGCCTTAAATCATTGAGCTACACCTATACATCACCG TATAAAGAGAATTTCACACCTGAGTTTCTTGTCTTCTTTCACTTTGCTGAAATCGAGCAGATTGCAGGAGGCAAATTACGAGAATTCACCATTACTTTGA ATGGCTTAAAGTATGGGCTCTTTACCCTTGAATACTTGAAGCCATTGACCATAGGTCCATATAAATTACAAGATCAAGAAGGTCTAGTTAGGTTTTCTAT TGATGCAAGTTCTGACCTTCCACCTATCCTAAATGCCTTTGAGATCTTCGAACTATTGCCACTCCATGATTCACCGACAAACCAAACAGACGTTGATGCA ATCATGGCCATCAAGAAAGCATACAAAATAGATCGAGTTGACTGGCAAGGAGATCCATGTTTGCCACGAATTACTACGTGGACTGGTTTGCAGTGCAACA ATGATAATCCTCCAAGGATCATCTCGCTGAATCTAAGTTCAAGTCAATTATCAGGGAATATAGATGTTTCACTATTGAGCCTCACAACAATCCAATCCTT GGATTTATCAAACAATGAATTGACAGGGACAGTGCCAGAAGCTTTTGCGCAGCTGCCACATCTTACGATCCTATATTTGAGTAGGAATAAACTCACAGGT GCAGTTCCCTATAGTCTCAAGGAAAAGTCTAAGAGTAGACAGTTGCAGCTGAGTTTGGATGGAAATCTGGATTTATGCAAGATCGATACATGTGAAAAGA AGCAGGGAAGTTTTCCTGTTCCAGTTATTGCATCTGTCATATCAGTTTCGGTGCTCCTTCTCCTTAGCATTATAACTATCTTCTGGAGGTTGAAAAGAGG GAGATTGAATGTGTCATTATCTTCCTCGGTGGGCTTATCCTTGTCACTGAAATCAAAGAATCAACCATTTACATACACTGAAATAGTTAGCATTACCAAT AATTTCCAAACCATTATTGGAGAAGGAGGATTTGGAAAAGTATATCTTGGAAACCTGAATGATGGTCGTCAAGTTGCTGTCAAGTTGTTATCTCAATCCT CAAGGCAAGGTTATAAAGAATTTCTAGCGGAGGTCCAACTATTGATGATTGTTCATCACAGAAACTTGGTGTCCCTCGTTGGTTATTGTAATGAGAAAGA AAATATGGCACTGGTTTATGAATACATGGCAAATGGGAACTTGAAGGATCAATTGTTAGAAAATAGCACAAATATGTTGAATTGGAGGGCAAGGCTGCAA ATTGCAGTAGACGCAGCACAAGGTTTGGAATATCTGCATAATGGTTGCAGGCCGCCAATAGTCCATAGAGATTTGAAATCATCCAACATCTTATTAACTG AAAACCTTCAAGCCAAGATTGCTGATTTCGGGCTGTCCAAAGCCTTCGCAAATGAAGGAGACTCGCATGTCACAACTGTACCTGCAGGTACACCCGGATA CATTGATCCTGAATTTCGAGCATCAGGAAACTTAAATAAGAAAAGTGATGTTTACAGCTTTGGTATTCTTCTGTGTGAGCTAATAACTGGTCAACCGCCT TTAATAAGGGGCCATCAGGGCCACACTCACATACTTCAATGGGTGAGTCCTTTAGTTGAAAGAGGGGATATCCAGAGCATTATCGATCCAAGGCTGCAAG GTGAATTCAACACTAATTGTGCTTGGAAAGCTCTGGAGATAGCACTGTCCTGCGTGCCCCCGACTTCAATACAAAGGCCGGACATGAGTGATATTTTGGG AGAGCTAAAGGAATGTCTGGCCATGGAAATGTCATCTGAAATAAGCATGTGTGGTTCCGTTGAAATGAGCTTGGTGCTTGGCACAGATATGGCTCCAAAT CTTAGGTAG
AA sequence Show only first row Show all	>Potri.019G094300.2 pacid=42773330 polypeptide=Potri.019G094300.2.p locus=Potri.019G094300 ID=Potri.019G094300.2.v4.1 annot-version=v4.1 MDGGQILLSYIKVWVILLLLSATFPNSKLAAKNTEQDKKRKLAAENSGISIDCGADEDYTDRNTGISYKTDKDFISTGKNKVVAPEYDLTSTLYYGKMVN SLRIFPEGDRNCYTLKPREGKNQNYYVRAFFRYGNYDSKNQTQIKFDLYIGVNYWATVEETFENKYWINYDIIHYSVTDTIYVCLVNTGFGVPFISGLDL LFMNDSSYRSMNGSLLRRVQADLGGEVSLGTIRYPDDVYARIWQLDVNLTDSVSNISTEAITNIDIQGSDNRCRLPVEVLRTAVQPRNGLKSLSYTYTSP YKENFTPEFLVFFHFAEIEQIAGGKLREFTITLNGLKYGLFTLEYLKPLTIGPYKLQDQEGLVRFSIDASSDLPPILNAFEIFELLPLHDSPTNQTDVDA IMAIKKAYKIDRVDWQGDPCLPRITTWTGLQCNNDNPPRIISLNLSSSQLSGNIDVSLLSLTTIQSLDLSNNELTGTVPEAFAQLPHLTILYLSRNKLTG AVPYSLKEKSKSRQLQLSLDGNLDLCKIDTCEKKQGSFPVPVIASVISVSVLLLLSIITIFWRLKRGRLNVSLSSSVGLSLSLKSKNQPFTYTEIVSITN NFQTIIGEGGFGKVYLGNLNDGRQVAVKLLSQSSRQGYKEFLAEVQLLMIVHHRNLVSLVGYCNEKENMALVYEYMANGNLKDQLLENSTNMLNWRARLQ IAVDAAQGLEYLHNGCRPPIVHRDLKSSNILLTENLQAKIADFGLSKAFANEGDSHVTTVPAGTPGYIDPEFRASGNLNKKSDVYSFGILLCELITGQPP LIRGHQGHTHILQWVSPLVERGDIQSIIDPRLQGEFNTNCAWKALEIALSCVPPTSIQRPDMSDILGELKECLAMEMSSEISMCGSVEMSLVLGTDMAPN LR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G29990			Leucine-rich repeat transmembr...		Potri.019G094300 [exp]	0	1
AT4G29990			Leucine-rich repeat transmembr...		Potri.019G094600 [exp]	7.87	0.9507
AT2G15620		ATHNIR, NIR1	ARABIDOPSIS THALIANA NITRITE R...		Potri.004G140800 [exp]	11.61	0.9481	NIR1.1
					Potri.005G211050 [exp]	19.79	0.9510
AT1G52820			2-oxoglutarate (2OG) and Fe(II...		Potri.006G248000 [exp]	21.21	0.9625
AT4G18250			receptor serine/threonine kina...		Potri.017G008100 [exp]	26.15	0.9543
AT5G38260			Protein kinase superfamily pro...		Potri.017G008600 [exp]	27.96	0.9504
AT3G05660		AtRLP33	receptor like protein 33 (.1)		Potri.011G021216 [exp]	30.00	0.9558
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Potri.016G056600 [exp]	30.72	0.9577
AT3G54110		ATUCP1, UCP1, U...	ARABIDOPSIS THALIANA UNCOUPLIN...		Potri.016G110100 [exp]	31.93	0.9004	UCP2.3
AT5G46880	HD	HDG5, HB-7	HOMEODOMAIN GLABROUS 5, homeob...		Potri.001G137800 [exp]	34.92	0.9566

Compare expression of checked genes

Potri.019G094300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.