Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29990 636 / 0 Leucine-rich repeat transmembrane protein kinase protein (.1) AT2G29000 616 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G19230 604 / 0 Leucine-rich repeat transmembrane protein kinase protein (.1) AT1G07560 598 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G51805 598 / 0 Leucine-rich repeat protein kinase family protein (.1.2) AT3G21340 598 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G05700 598 / 0 Leucine-rich repeat transmembrane protein kinase protein (.1) AT1G51800 597 / 0 IOS1 IMPAIRED OOMYCETE SUSCEPTIBILITY 1, Leucine-rich repeat protein kinase family protein (.1) AT2G19210 594 / 0 Leucine-rich repeat transmembrane protein kinase protein (.1) AT1G51850 593 / 0 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G094300 [exp] 1689 / 0 AT4G29990 628 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.019G094700 [exp] 1462 / 0 AT4G29990 652 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.019G094200 [exp] 826 / 0 AT4G29990 452 / 1e-150 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.019G094250 [exp] 515 / 2e-176 AT1G05700 184 / 8e-52 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.006G132100 [exp] 423 / 9e-134 AT2G37050 1317 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.016G084900 [exp] 419 / 3e-132 AT2G37050 1276 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.010G052800 [exp] 391 / 1e-121 AT1G67720 1330 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.007G004700 [exp] 377 / 5e-116 AT2G37050 466 / 2e-149 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.008G181200 [exp] 273 / 3e-78 AT1G67720 1339 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025849 [exp] 680 / 0 AT4G29990 803 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Lus10038251 [exp] 469 / 2e-153 AT4G29990 560 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Lus10019907 [exp] 402 / 1e-125 AT2G37050 1337 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10038172 [exp] 336 / 9e-102 AT5G48740 967 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10015057 [exp] 289 / 1e-83 AT2G37050 1316 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10038174 [exp] 278 / 8e-83 AT5G48740 793 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10023166 [exp] 285 / 4e-82 AT2G37050 1323 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10036935 [exp] 277 / 2e-79 AT1G67720 1303 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037051 [exp] 279 / 1e-78 AT1G67720 1293 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10025926 [exp] 269 / 8e-77 AT5G48740 1094 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0202 [poplar] [flax] GBD PF12819 [poplar] [flax] Malectin_like Malectin-like domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.019G094600.2 pacid=42774622 polypeptide=Potri.019G094600.2.p locus=Potri.019G094600 ID=Potri.019G094600.2.v4.1 annot-version=v4.1 ATGGATGGTGGGCAAATACTGCTTTCTTATATAAAAGTATGGGTGATCCTCCTTTTGCTCTCAGCTACGTTTCCGAACTCAAAACTTGCTGCCAAAAATA CTGAGCAGGATAAAAAAAGAAAGCTTGCTGCAGAAAACTCAGGCATCAGCATTGATTGTGGGGCGGATGAAGATTATACGGATAGGGAAACTGGAATATC TTACAAAACCGACAAAGATTTCATTAGTACGGGCAAGAATAAGGTCGTAGCACCAGAGTATAACTTGACGACTCTTTACTATGGGAAAATGGTGAATAGC TTGAGAATCTTTCCTGAAGGTGAAAGGAATTGTTATACATTGAAACCCATACAGGGTAAGAACCAAAACTATTACGTCAGAGCTTTCTTCCGCTATGGAA ATTACGATTCTAAGAATCAAACTCAAATAAAGTTTGATCTATACATCGGGGTAAACTATTGGGCAACGGTTGAAGAAACTTTTGAAAATAAGTACTGGAT AAATTACGACATTATTCATTATTCAGTAACTGATACCATTTATGTGTGTCTCGTAAATACGGGTTTCGGAGTTCCTTTCATCAGTGGATTGGATTTACTG TTCATGAATGATTCCTCGTATAGAAGTATGAATGGATCGTTGCTTCGCAGGGTGCAAGCTGACCTTGGCGGCGAGGTCAGCTTAGGCACCATAAGGTACC CCGATGACGTGTATGCTCGCATCTGGCAGCTTGACGTCAGCCTCACCGATTCAGTTTCAAATATTAGCACCGAAGCAATTACAAATATTGATATCCAGGG CAGTGATAATCGCTGCCGTCTACCAGTCGAAGTCTTGAGAACAGCGGTTCAGCCTCGAAATGGCCTTAAATCATTGAGCTACACCTATACATCACCGTAT AAAGAGAATTTCACACCTGAGTTTCTTGTCTTCTTTCACTTTGCTGAAATCGAGCAGATTGCAGGAGGCAAATTACGAGAATTCACCATTACTTTGAATG GCTTAAAGTATGGGCTCTTTACCCTTGAATACTTGAAGCCATTGACCATAGGTCCATATAAATTACAAGATCAAGAAGGTCTAGTTAGGTTTTCTATTGA TGCAAGTTCTGACCTTCCACCTATCCTAAATGCCTTTGAGATCTTCGAACTATTGCCACTCCATGATTCACCGACAAACCAAACAGACGTTGATGCAATC ATGGCCATCAAGGAAGCATACAAAATAAATAGAGGTGACTGGCAGGGAGATCCATGTTTGCCACGTACTACGTGGACTGGTTTGCAGTGCAACAATGATA ACCCTCCAAGGATCATCTCTCTGAATCTAAGTTCAAGTCAATTATCAGGGAATATAGCTGTTTCACTCTTGAACCTCACATCAATCAAGTCCTTGGATTT ATCAAACAATGAATTGACAGGGACAGTGCCAGAAGCTTTTGCGCAACTGCCAAATCTTACAATCCTATATTTGAGTAGGAATAAACTCACAGGTGCAGTT CCCTATAGTCTCAAGGAAAAGTCTAAGAGTAGACAGTTGCAGCTGAGTTTGGATGGAAATCCGGATTTATGCAAGTTGGATACATGTGAAAAGAAGCAGG GAAGTTTTCCTGTTCCAGTTATTGCATCTGTCATATCAGTTTCGGTGCTCCTTCTCCTTAGCATTATAACTATCTTCTGGAGGTTGAAAAGAGGGAGATT GAATGTGCCATTATCTTCCTCGGTGGGCTTATCCTTGTCACTAAAATCAAAGAATCAACCATTTACATACACTGAAATAGTTAGCATTACCAACAATTTC CAAACCATTATTGGAGAAGGAGGATTTGGAAAAGTATATCTTGGAAACCTGAATGATGGTCGTCAAGTTGCTGTCAAGTTGTTATCTCAATCCTCAAGGC AAGGTTATAAAGAATTTCTAGCGGAGGTCAAACTATTGATTATTGTTCATCACAGAAACTTGGTGTCCCTCGTTGGTTATTGTAATGAGCAAGAAAATAT GGCACTTGTTTATGAATACATGGCAAATGGGAACTTGAAGGATCACTTGTTAGAAAATAGCACAAATATGTTGAATTGGAGGGCAAGGCTGCAAATTGCA GTAGACGCAGCACAAGGTTTGGAATATCTGCATAACGGTTGCAAGCCGCCAATAGTCCATAGAGATTTGAAATCATCCAACATCTTATTAACTGAAAACC TTCAAGCCAAGATTGCTGATTTCGGGTTGTCCAAAGCCTTCGCAAATGAAGGAGACTCGCATGTCATAACTGATCCTGCAGGCACGCCTGGATACATTGA TCCTGAATATCGAGCATCAGGAAACTTAAATAAGAAAAGTGATGTTTATAGCTTCGGTATTCTTCTGTGTGAGCTAATAACTGGTCAACCGCCTTTAATA AGGGGCCATCAGGGCCACACTCACATACTTCAATGGGTGAGTCCTTTAGTTGAAAGAGGGGATATCCAGAGCATTATCGATCCAAGGCTGCAAGGTGAAT TCAGCACTAATTGTGCTTGGAAAGCTCTGGAGATAGCATTGTCCTGCGTGCCCCCGACTTCAATACAAAGACCGGACATGAGTGATATTTTGGGAGAGCT AAAGGAATGTCTGGCCATGGAAATGTCATCTGAAATAAGCATGCGCGGTTCCGTTGAAATGAGCTTGGTGCTTGGCACAGATATGGCTCCAAATCTTAGG TAG
AA sequence Show only first row Show all	>Potri.019G094600.2 pacid=42774622 polypeptide=Potri.019G094600.2.p locus=Potri.019G094600 ID=Potri.019G094600.2.v4.1 annot-version=v4.1 MDGGQILLSYIKVWVILLLLSATFPNSKLAAKNTEQDKKRKLAAENSGISIDCGADEDYTDRETGISYKTDKDFISTGKNKVVAPEYNLTTLYYGKMVNS LRIFPEGERNCYTLKPIQGKNQNYYVRAFFRYGNYDSKNQTQIKFDLYIGVNYWATVEETFENKYWINYDIIHYSVTDTIYVCLVNTGFGVPFISGLDLL FMNDSSYRSMNGSLLRRVQADLGGEVSLGTIRYPDDVYARIWQLDVSLTDSVSNISTEAITNIDIQGSDNRCRLPVEVLRTAVQPRNGLKSLSYTYTSPY KENFTPEFLVFFHFAEIEQIAGGKLREFTITLNGLKYGLFTLEYLKPLTIGPYKLQDQEGLVRFSIDASSDLPPILNAFEIFELLPLHDSPTNQTDVDAI MAIKEAYKINRGDWQGDPCLPRTTWTGLQCNNDNPPRIISLNLSSSQLSGNIAVSLLNLTSIKSLDLSNNELTGTVPEAFAQLPNLTILYLSRNKLTGAV PYSLKEKSKSRQLQLSLDGNPDLCKLDTCEKKQGSFPVPVIASVISVSVLLLLSIITIFWRLKRGRLNVPLSSSVGLSLSLKSKNQPFTYTEIVSITNNF QTIIGEGGFGKVYLGNLNDGRQVAVKLLSQSSRQGYKEFLAEVKLLIIVHHRNLVSLVGYCNEQENMALVYEYMANGNLKDHLLENSTNMLNWRARLQIA VDAAQGLEYLHNGCKPPIVHRDLKSSNILLTENLQAKIADFGLSKAFANEGDSHVITDPAGTPGYIDPEYRASGNLNKKSDVYSFGILLCELITGQPPLI RGHQGHTHILQWVSPLVERGDIQSIIDPRLQGEFSTNCAWKALEIALSCVPPTSIQRPDMSDILGELKECLAMEMSSEISMRGSVEMSLVLGTDMAPNLR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G29990			Leucine-rich repeat transmembr...		Potri.019G094600 [exp]	0	1
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.017G009100 [exp]	3.00	0.9181
AT2G15080		AtRLP19	receptor like protein 19 (.1.2...		Potri.011G104600 [exp]	5.00	0.9131
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.017G009400 [exp]	6.00	0.8963
AT4G29990			Leucine-rich repeat transmembr...		Potri.019G094300 [exp]	7.87	0.9507
					Potri.004G011450 [exp]	8.00	0.8742
AT1G70250			receptor serine/threonine kina...		Potri.004G014250 [exp]	12.68	0.8784
					Potri.017G018901 [exp]	17.14	0.8632
AT5G13550		SULTR4;1	sulfate transporter 4.1 (.1)		Potri.010G211400 [exp]	17.88	0.8811
AT3G28890		AtRLP43	receptor like protein 43 (.1.2...		Potri.010G009750 [exp]	22.00	0.8668
AT1G58190		AtRLP9	receptor like protein 9 (.1.2)		Potri.017G018700 [exp]	22.44	0.8707

Compare expression of checked genes

Potri.019G094600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.