Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29990 652 / 0 Leucine-rich repeat transmembrane protein kinase protein (.1) AT1G51800 643 / 0 IOS1 IMPAIRED OOMYCETE SUSCEPTIBILITY 1, Leucine-rich repeat protein kinase family protein (.1) AT3G21340 639 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G29000 632 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G19230 626 / 0 Leucine-rich repeat transmembrane protein kinase protein (.1) AT1G51850 626 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G07560 623 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G51820 623 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G19210 621 / 0 Leucine-rich repeat transmembrane protein kinase protein (.1) AT1G05700 618 / 0 Leucine-rich repeat transmembrane protein kinase protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G094300 [exp] 1466 / 0 AT4G29990 628 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.019G094600 [exp] 1464 / 0 AT4G29990 636 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.019G094200 [exp] 879 / 0 AT4G29990 452 / 1e-150 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.019G094250 [exp] 568 / 0 AT1G05700 184 / 8e-52 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.006G132100 [exp] 425 / 3e-134 AT2G37050 1317 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.016G084900 [exp] 422 / 3e-133 AT2G37050 1276 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.010G052800 [exp] 398 / 4e-124 AT1G67720 1330 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.007G004700 [exp] 389 / 1e-120 AT2G37050 466 / 2e-149 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.002G242700 [exp] 354 / 8e-108 AT5G48740 1110 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025849 [exp] 684 / 0 AT4G29990 803 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Lus10038251 [exp] 489 / 5e-161 AT4G29990 560 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Lus10015057 [exp] 431 / 4e-136 AT2G37050 1316 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10019907 [exp] 421 / 1e-132 AT2G37050 1337 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10023166 [exp] 414 / 1e-129 AT2G37050 1323 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10037051 [exp] 406 / 3e-124 AT1G67720 1293 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10036935 [exp] 399 / 4e-124 AT1G67720 1303 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10038172 [exp] 344 / 1e-104 AT5G48740 967 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10025926 [exp] 340 / 1e-102 AT5G48740 1094 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10038174 [exp] 290 / 4e-87 AT5G48740 793 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0202 [poplar] [flax] GBD PF12819 [poplar] [flax] Malectin_like Malectin-like domain
Representative CDS sequence Show only first row Show all	>Potri.019G094700.2 pacid=42774177 polypeptide=Potri.019G094700.2.p locus=Potri.019G094700 ID=Potri.019G094700.2.v4.1 annot-version=v4.1 ATGGATAGTGGGCAAATACTGCTTTCTTATATAAGAGTATGGGTGATCCTCCTTTTGCTCTCAGCTACGTTTCAGAACTCAAAACTTGCGGCAAAAAATA CTGCGCAGGATAAAAAAAGAAAGCTTGCTGCAGAAAACTCAGGTTTCATCAGCATTGATTGTGGGGCGGAGGAAGATTATCTGGATTGGAAGACTGGAAT AACTTACAAAACCGACAAAGATTTCATTAGTACGGGCAAGAATATGTTCGTAGCACCAGAGTATCAGTTGACGACTTTTTACTATGGGAATATGGTGAAT AGCTTGAGAACCTTTCCTGAAGGTAAAAGGAATTGTTATACATTGAAACCTAGACAGGGTAAGAACCAAAACTATTACGTTAGAGCTTTCTTCTACTATG GAAATTACGATTCTAAGAATCAAACTCAAATAAAGTTTGATCTATACCTCGGGGTTAACTATTGGGCAACAGTGGTTGATATGCAGTGGATATATTACAA TATTATTCATTATTCAGTAACTGATACCATTTATGTGTGTCTCGTAAATACGGGTTCCGGAGTTCCTTTCATCAATGGATTGGATTTACGGTTCATGAAT GATTCCCCGTATAGAACTATGAATGGATCGTTGCTTCCTATGGTGCATGCTGACCTTGGCGGCCATCCAACCCAAGGCTACAAAACCATTAGGTACAAAG ATGACGTGTACGATCGCATATGGCGGTTTGACGTCAACCTCACCGATTCAGTTTCAAATGGCACCGAAACAAATATTGATATCCAGGGCAGTGATGATCC CTGCCGTCTACCTGTCGAAGTCTTGAGAACGGCGGTTCAGCCTCGAAATGGCCTTAATTCATTGAGCTACAGCTATCCATCACCGCATACAGAGAATTTC ACACCTGAGTTTCTTGTCTTCTTTCATTTTGCTGAAATATTCGAGCAGACTGCAATAGGCAAATTACGAGAATTCACCATTACTTTGAATGGCTTAAACT ATGGTCCCTTTACCCTTGAATACTTGAAGCCATTGACCATACGTTCAAATATAACTCAAGTTCAAGAAGGTCAAGTTAGGTTTTCTATTGATGCAACGTT GCGGTCTGACCTTCCACCTATCCTAAATGCCTTTGAGATCTTCAAACTATTGCCACTCCCTGATTCACCGACAAACCAAACAGACGTTGATGCAATCATG GCCATCAAGGAAGCATACAAAATAGATAGAGTTGACTGGCAGGGAGATCCATGTTTGCCACTTATTACGTGGACTGGTTTGCAGTGCAACGATGATAACC CTCCAAGGATCATCTCTATGAATCTAAGTTCAAGTCAATTATCAGGGAATATAGCTGTTTCACTCTTGAACCTCACAGCAATCAAGTCCTTGAATTTATC AAACAATGAATTGACAGGGACAGTGCCAGAAGCTTTTGCGCAGCTACCAGATCTTACTATCCTAGATTTGAGCGGGAACAAACTCACAGGTGCAGTTCCC CATAGTCTCAAGGAAAAGTCTAACAATGGACAGTTGAAGCTGAGTTTGGATGGAAATCTGGATTTATGCAAGTTGGATACATGTGAAAAGAAGCAGCGAA GTTTTCCTGTTCCAGTTATTGCATCTGTCATATCAGTTTTGGTGCTCCTCCTCCTTAGCATTATAACTATCTTCTGGAGGTTGAAAAGAGTGAGATGGAA TGTGTCATTATCTTCCTCAGTGGGCTTATCGAGAAAAGAATTGTCACTGAAATCAAAGAATCAACCATTTACATACGTTGAAATAGTTAGCATTACCAAC AATTTCCAAACCATTATTGGAGAAGGAGGATTTGGAAAAGTATATCTTGGCAACCTGAAAGATGGTCGTCAAGTTGCTGTCAAGTTGTTATCTCAATCCT CAAGGCAAGGTTATAAAGAATTTCTAGCGGAGGTCCAACTATTGATGATTGTTCATCACAAAAACTTGGTGTCCCTCGTTGGTTACTGTAATGAGCATGA AAATATGGCACTTGTTTATGAATACATGGCAAATGGGAACTTGAAGGAGCAACTGTTAGAAAATAGCACAAATATGTTGAATTGGAGGGAAAGGCTGCAA ATTGCAGTAGACGCAGCACAAGGTTTGGAATATCTGCATAATGGTTGTAGGCCGCCAATAGTCCATAGAGATTTGAAATCATCAAACATCTTATTAACTG AAAACCTTCATGCCAAGATTGCTGATTTTGGGTTGTCCAAAGCCTTCGCAACCGAAGAAGATTCGCATGTCATAACTGTTCCTGCAGGCACGCCCGGATA CATTGATCCTGAATTTCGAGCATCAGGACACTTAAATAAGAAAAGTGATGTTTACAGCTTTGGTATTCTTCTGTGTGAGCTAATAACTGGTCAACCGCCT TTAATAAGGGGCCATAAAGGCCACACTCATATACTTCAATGGGTGAGTCCTCTAGTTGAAAGAGGTGATATCCAGAGCATTATCGATCCAAGGTTGCAAG GTGAATTCAACACTAATTATGCTTGGAAAGCTCTGGAGATAGCATTGTCCTGCGTGCCCTCGACTTCAACACAAAGGCCGGACATGAGTGATATTTTGGG AGAGCTAAAGGAATGTCTGGCCATGGAGATGTCATCTGAAATAAGCATGCGCGGTTCCGTTGAAATGAGCTTGGTGCCTGGCACAGATATGGCTCCAAAT CTTAGGTAG
AA sequence Show only first row Show all	>Potri.019G094700.2 pacid=42774177 polypeptide=Potri.019G094700.2.p locus=Potri.019G094700 ID=Potri.019G094700.2.v4.1 annot-version=v4.1 MDSGQILLSYIRVWVILLLLSATFQNSKLAAKNTAQDKKRKLAAENSGFISIDCGAEEDYLDWKTGITYKTDKDFISTGKNMFVAPEYQLTTFYYGNMVN SLRTFPEGKRNCYTLKPRQGKNQNYYVRAFFYYGNYDSKNQTQIKFDLYLGVNYWATVVDMQWIYYNIIHYSVTDTIYVCLVNTGSGVPFINGLDLRFMN DSPYRTMNGSLLPMVHADLGGHPTQGYKTIRYKDDVYDRIWRFDVNLTDSVSNGTETNIDIQGSDDPCRLPVEVLRTAVQPRNGLNSLSYSYPSPHTENF TPEFLVFFHFAEIFEQTAIGKLREFTITLNGLNYGPFTLEYLKPLTIRSNITQVQEGQVRFSIDATLRSDLPPILNAFEIFKLLPLPDSPTNQTDVDAIM AIKEAYKIDRVDWQGDPCLPLITWTGLQCNDDNPPRIISMNLSSSQLSGNIAVSLLNLTAIKSLNLSNNELTGTVPEAFAQLPDLTILDLSGNKLTGAVP HSLKEKSNNGQLKLSLDGNLDLCKLDTCEKKQRSFPVPVIASVISVLVLLLLSIITIFWRLKRVRWNVSLSSSVGLSRKELSLKSKNQPFTYVEIVSITN NFQTIIGEGGFGKVYLGNLKDGRQVAVKLLSQSSRQGYKEFLAEVQLLMIVHHKNLVSLVGYCNEHENMALVYEYMANGNLKEQLLENSTNMLNWRERLQ IAVDAAQGLEYLHNGCRPPIVHRDLKSSNILLTENLHAKIADFGLSKAFATEEDSHVITVPAGTPGYIDPEFRASGHLNKKSDVYSFGILLCELITGQPP LIRGHKGHTHILQWVSPLVERGDIQSIIDPRLQGEFNTNYAWKALEIALSCVPSTSTQRPDMSDILGELKECLAMEMSSEISMRGSVEMSLVPGTDMAPN LR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G29990			Leucine-rich repeat transmembr...		Potri.019G094700 [exp]	0	1
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.018G117900 [exp]	2.44	0.9217
AT5G05460		AtENGase85A	Endo-beta-N-acetyglucosaminida...		Potri.010G184200 [exp]	2.44	0.9063
AT1G58190		AtRLP9	receptor like protein 9 (.1.2)		Potri.005G007600 [exp]	3.46	0.9152
AT3G28890		AtRLP43	receptor like protein 43 (.1.2...		Potri.010G009750 [exp]	3.74	0.8936
AT2G15080		AtRLP19	receptor like protein 19 (.1.2...		Potri.011G104600 [exp]	6.92	0.8942
AT1G66940			protein kinase-related (.1.2.3...		Potri.017G117175 [exp]	7.93	0.8582
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.018G134200 [exp]	8.94	0.8834
					Potri.017G008901 [exp]	10.09	0.8463
AT3G47570			Leucine-rich repeat protein ki...		Potri.013G133100 [exp]	10.95	0.8585
AT1G58190		AtRLP9	receptor like protein 9 (.1.2)		Potri.017G018700 [exp]	11.48	0.8826

Compare expression of checked genes

Potri.019G094700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.