Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28300 261 / 6e-81 Protein of unknown function (DUF1421) (.1), Protein of unknown function (DUF1421) (.2) AT5G14540 85 / 3e-17 Protein of unknown function (DUF1421) (.1) AT3G01560 76 / 2e-14 Protein of unknown function (DUF1421) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G131600 [exp] 613 / 0 AT4G28300 284 / 1e-89 Protein of unknown function (DUF1421) (.1), Protein of unknown function (DUF1421) (.2) Potri.001G348500 [exp] 80 / 1e-15 AT5G14540 185 / 1e-51 Protein of unknown function (DUF1421) (.1) Potri.012G083200 [exp] 73 / 2e-13 AT5G14540 147 / 3e-38 Protein of unknown function (DUF1421) (.1) Potri.T125008 [exp] 69 / 4e-12 AT5G14540 142 / 2e-36 Protein of unknown function (DUF1421) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018593 [exp] 360 / 2e-118 AT4G28300 376 / 1e-125 Protein of unknown function (DUF1421) (.1), Protein of unknown function (DUF1421) (.2) Lus10031645 [exp] 276 / 1e-86 AT4G28300 392 / 2e-132 Protein of unknown function (DUF1421) (.1), Protein of unknown function (DUF1421) (.2) Lus10033692 [exp] 262 / 2e-81 AT4G28300 392 / 1e-132 Protein of unknown function (DUF1421) (.1), Protein of unknown function (DUF1421) (.2) Lus10039827 [exp] 256 / 2e-78 AT4G28300 377 / 9e-126 Protein of unknown function (DUF1421) (.1), Protein of unknown function (DUF1421) (.2) Lus10032138 [exp] 88 / 4e-18 AT5G14540 204 / 4e-58 Protein of unknown function (DUF1421) (.1) Lus10014549 [exp] 87 / 8e-18 AT5G14540 207 / 2e-59 Protein of unknown function (DUF1421) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [poplar] [flax] UBA PF07223 [poplar] [flax] DUF1421 UBA-like domain (DUF1421)
Representative CDS sequence Show only first row Show all	>Potri.019G095400.2 pacid=42773028 polypeptide=Potri.019G095400.2.p locus=Potri.019G095400 ID=Potri.019G095400.2.v4.1 annot-version=v4.1 ATGGCATCTGGGTCATCGGGTCGGGCGAACTCGGGTTCAAAGGGATTCGATTTTGGGACCGATGACATTCTCTGCTCTTATGAAGATTACGGTACCAACA ATCAAGATTCATCAAATGGGTCTCATTCGGATCCTGTGATCGGGTCCAATTCGAGCAAGGATTTCCACAAAAGCAAAATGACAAGGTCATCAGTGTATCC TGCTAGTTCCTATAGCCAGCCAGAGGATTCTTTCCATTTCAGTCCAGATGTTGTCTCTACTGTTGAGAAAGGCATGAAAAAACATACTGACAACATCATG CGTTTTCTTGAGGGTATCAGTTCACGACTGTCCCAGTTGGAATTGTCTTGCTACAACCTTGATAAAGCAATTGGAGATATGCGTTCGGATTCTATTCGTG ACAATGAGGAGGCAGATTTAAAACTTAAATCTCTTGAGAAGCATATTCAAGAGGTGCACAGGTCTGTCCAGATCCTAAGAGATAAGCAAGAGCTTGCTGA GACTCAGAAAGAATTAGCCAAGCTTCAGCTTGCACAGAAGGAACCCTCTTCATCAAGCCAGTCCCAATCTAATGAGGAAAAAGCACCACCAGCTGCCTCT GATCCCAAAGCAACTGACAACGCATCTGATATACGTAACCAGCAATTGGCTCTTGCTCTACCACACCAGGTAGCACCACAGCAACATGCACCACCTGTGC CTCCACTCTCTCAAGCCCCACCTCAGAATGTGACTCAACAGCAATCTTATTATTTGCCTCCTGCCCAATTACCAACTCCAGCAGCTCCGATCCAACACCC TCAGAACCAATATCTACCTTCTGATCCTCAGTACCGAACACCCCAAATGCAAGATGTCTCTAGAGTGGCACCACAGCCTGCACAGCCACAAGTAAACCAG ACGCTACAAGGCCAGCAATTTCCTCAGTATCAGCAACAGTGGCCCCAGCAGTTACCTTTGCAAGTACAACCACCTCAACAGACACAGCCCCAGATCAAGC CTCCATCTACAACAGCTTACACTCCCTACCAACCACCATGTCAGCCAACAAATCCCTCTCCACAAGAAACTCTGCCTAACAGCTTGCCCATGCAAGTTTC ATATTCAGGTGTTCCTCAATCCTTAGCTAGTCGTGCTGACACCATGCCATATGGATATGGAGCTGGAAGAACAGCTGTTCCACAGCAACCACGGCAACCT TCACTTCAGCAAATTAAGGGCACTTTTGGAGGACAGCACAGTGATGCATATGCAACTGCTGGACCTCACCCAGGCCAGCCTCCAGTAAGTGCATACATGG TCTATGATGGTGAAGGTGGGAGAACACACCATCCACCTCAACAATCTCACTTCCCACAGGGTGGATACCCTCCTCAGCCAGCTGCAGGCACAGGTATGCT GCCCCGCCATTCAAGCCCTTCACACTTTTTTCGTAACCATCCCTACAGTGACTTGATCGAGAAATTGGTAAGCATGGGTTTCCGGGGTGATCATGCTGCC AGCGTGATTCAGAGGATGGAGGAGAGTGGTGAGCCTGTGGATTTTAATGCTGTGCTTGATAGGTTGAATGTGCAGTCATCTGGGGGTTCTCAGAGGGGAG GATGGTCAGGTTGA
AA sequence Show only first row Show all	>Potri.019G095400.2 pacid=42773028 polypeptide=Potri.019G095400.2.p locus=Potri.019G095400 ID=Potri.019G095400.2.v4.1 annot-version=v4.1 MASGSSGRANSGSKGFDFGTDDILCSYEDYGTNNQDSSNGSHSDPVIGSNSSKDFHKSKMTRSSVYPASSYSQPEDSFHFSPDVVSTVEKGMKKHTDNIM RFLEGISSRLSQLELSCYNLDKAIGDMRSDSIRDNEEADLKLKSLEKHIQEVHRSVQILRDKQELAETQKELAKLQLAQKEPSSSSQSQSNEEKAPPAAS DPKATDNASDIRNQQLALALPHQVAPQQHAPPVPPLSQAPPQNVTQQQSYYLPPAQLPTPAAPIQHPQNQYLPSDPQYRTPQMQDVSRVAPQPAQPQVNQ TLQGQQFPQYQQQWPQQLPLQVQPPQQTQPQIKPPSTTAYTPYQPPCQPTNPSPQETLPNSLPMQVSYSGVPQSLASRADTMPYGYGAGRTAVPQQPRQP SLQQIKGTFGGQHSDAYATAGPHPGQPPVSAYMVYDGEGGRTHHPPQQSHFPQGGYPPQPAAGTGMLPRHSSPSHFFRNHPYSDLIEKLVSMGFRGDHAA SVIQRMEESGEPVDFNAVLDRLNVQSSGGSQRGGWSG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G28300			Protein of unknown function (D...		Potri.019G095400 [exp]	0	1
AT3G57890			Tubulin binding cofactor C dom...		Potri.006G059100 [exp]	2.00	0.7632
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Potri.005G028800 [exp]	2.44	0.7733	SNF4.3
AT5G06560			Protein of unknown function, D...		Potri.006G199000 [exp]	2.64	0.7520
AT4G32760			ENTH/VHS/GAT family protein (....		Potri.006G241000 [exp]	9.16	0.7030
AT1G20110			RING/FYVE/PHD zinc finger supe...		Potri.002G018900 [exp]	10.58	0.7789
AT4G08960			phosphotyrosyl phosphatase act...		Potri.002G099000 [exp]	14.69	0.7490
AT5G06830			unknown protein		Potri.006G059500 [exp]	22.44	0.6502
AT3G03440			ARM repeat superfamily protein...		Potri.017G128100 [exp]	25.69	0.7324
					Potri.019G036280 [exp]	30.16	0.7485
AT4G24880			unknown protein		Potri.015G095400 [exp]	31.46	0.6798

Compare expression of checked genes

Potri.019G095400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.