Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75335 73 / 7e-17 unknown protein AT5G60030 73 / 2e-15 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G126701 [exp] 143 / 5e-43 AT1G75335 70 / 7e-16 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023334 [exp] 75 / 2e-16 AT5G60030 76 / 4e-16 unknown protein Lus10038477 [exp] 64 / 2e-13 AT1G75335 64 / 9e-15 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.019G095600.3 pacid=42773824 polypeptide=Potri.019G095600.3.p locus=Potri.019G095600 ID=Potri.019G095600.3.v4.1 annot-version=v4.1 ATGAAGACGGTGACCGGCAAAATCACAGATTCAACACCGGTGTCAATCTCCAAAGCGGCTTCTATACTCTCCAAGTTCGTATCCTCTGAGAATGGCGCTT CCCAGGCCTTAAACGCTTACCTTCGTCGCGCCACCGCCGCTTTCGATGAGCTGTCACGGCTTCACTCAAAATCCGATCGACGGAAACACAAAAAGGATTC ATCTTTGATTCGGAGTGTGGAGGCGAGTCAATCCGAGTTAGTGAATAATAGTGAGCAGATGGTGAAGAAGGAGGTTAAGGAAGAGGGTAGTGTGGGAGAT GAGGAGATAGAGAGTAAGAAGGAAAAGAAGAGGAAGAGGAAGGGTGATTTGGCAGAGCAAACTGAGAAGAGCAATGGGATAAAGAAGGAAAAGGCAGAGG TTGAGGAGAATGGGAGTGTGGTGGACAAAATTGAAATTAGAGAAGAAGAGGAAAAGAAGAAGAGGAAGAGGAAGAGGAAGAGTGGAGAGGTAGAGGTAAA GGAGGAGAGGGAGGAGGAAGAGAAGGATGGATTGGAGGAGGAGGGCCAAAGGAAGAAGAGGAGGAGGAAACAAGTGGATGATAATTGA
AA sequence Show only first row Show all	>Potri.019G095600.3 pacid=42773824 polypeptide=Potri.019G095600.3.p locus=Potri.019G095600 ID=Potri.019G095600.3.v4.1 annot-version=v4.1 MKTVTGKITDSTPVSISKAASILSKFVSSENGASQALNAYLRRATAAFDELSRLHSKSDRRKHKKDSSLIRSVEASQSELVNNSEQMVKKEVKEEGSVGD EEIESKKEKKRKRKGDLAEQTEKSNGIKKEKAEVEENGSVVDKIEIREEEEKKKRKRKRKSGEVEVKEEREEEEKDGLEEEGQRKKRRRKQVDDN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G75335			unknown protein		Potri.019G095600 [exp]	0	1
AT3G05060			NOP56-like pre RNA processing ...		Potri.013G032300 [exp]	3.00	0.9290
AT3G12860			NOP56-like pre RNA processing ...		Potri.015G092900 [exp]	3.46	0.9205	NOP56.1
AT3G18600			P-loop containing nucleoside t...		Potri.009G045300 [exp]	4.58	0.8750
AT5G27120			NOP56-like pre RNA processing ...		Potri.005G045600 [exp]	5.00	0.9044
AT1G61730	GeBP		DNA-binding storekeeper protei...		Potri.007G119800 [exp]	5.19	0.8570
AT3G57150		ATNAP57, ATCBF5...	homologue of NAP57 (.1)		Potri.016G041200 [exp]	8.00	0.8693	Pt-NAP57.1
AT5G62440			Protein of unknown function (D...		Potri.013G022500 [exp]	8.77	0.8496
AT4G25340		ATFKBP53	FK506 BINDING PROTEIN 53 (.1.2...		Potri.012G129200 [exp]	8.94	0.8508
AT4G11420		ATTIF3A1, ATEIF...	eukaryotic translation initiat...		Potri.013G011900 [exp]	10.00	0.8017
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Potri.018G049500 [exp]	10.39	0.7934

Compare expression of checked genes

Potri.019G095600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.