Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59690 434 / 9e-148 IQD13 IQ-domain 13 (.1) AT2G43680 367 / 1e-119 IQD14 IQ-domain 14 (.1.2.3) AT3G52290 129 / 2e-32 IQD3 IQ-domain 3 (.1) AT5G03040 129 / 4e-32 IQD2 IQ-domain 2 (.1.2.3) AT3G22190 108 / 2e-25 IQD5 IQ-domain 5 (.1.2) AT1G01110 106 / 3e-24 IQD18 IQ-domain 18 (.1.2) AT2G26410 105 / 5e-24 IQD4 IQ-domain 4 (.1) AT2G26180 101 / 6e-23 IQD6 IQ-domain 6 (.1) AT4G00820 99 / 8e-22 IQD17 IQ-domain 17 (.1) AT5G13460 98 / 8e-22 IQD11 IQ-domain 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G127200 [exp] 797 / 0 AT3G59690 447 / 5e-153 IQ-domain 13 (.1) Potri.006G131100 [exp] 141 / 2e-36 AT5G03040 369 / 1e-123 IQ-domain 2 (.1.2.3) Potri.010G218100 [exp] 136 / 1e-34 AT5G03040 323 / 8e-106 IQ-domain 2 (.1.2.3) Potri.016G086300 [exp] 132 / 2e-33 AT5G03040 372 / 6e-125 IQ-domain 2 (.1.2.3) Potri.001G215200 [exp] 113 / 7e-27 AT3G22190 272 / 4e-87 IQ-domain 5 (.1.2) Potri.002G178500 [exp] 113 / 1e-26 AT4G00820 458 / 1e-156 IQ-domain 17 (.1) Potri.011G153400 [exp] 112 / 3e-26 AT4G00820 331 / 3e-107 IQ-domain 17 (.1) Potri.001G448100 [exp] 112 / 3e-26 AT4G00820 288 / 2e-90 IQ-domain 17 (.1) Potri.001G021000 [exp] 105 / 3e-24 AT5G13460 345 / 3e-115 IQ-domain 11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025593 [exp] 540 / 0 AT3G59690 498 / 1e-172 IQ-domain 13 (.1) Lus10027059 [exp] 532 / 0 AT3G59690 496 / 1e-171 IQ-domain 13 (.1) Lus10036508 [exp] 145 / 1e-37 AT5G03040 343 / 1e-113 IQ-domain 2 (.1.2.3) Lus10041419 [exp] 139 / 5e-36 AT5G03040 345 / 2e-115 IQ-domain 2 (.1.2.3) Lus10019916 [exp] 116 / 7e-28 AT5G03040 410 / 9e-141 IQ-domain 2 (.1.2.3) Lus10026486 [exp] 117 / 8e-28 AT5G03040 414 / 4e-140 IQ-domain 2 (.1.2.3) Lus10013522 [exp] 105 / 3e-24 AT2G26180 403 / 2e-138 IQ-domain 6 (.1) Lus10013362 [exp] 99 / 5e-22 AT3G22190 338 / 4e-113 IQ-domain 5 (.1.2) Lus10004107 [exp] 95 / 1e-20 AT3G22190 308 / 6e-101 IQ-domain 5 (.1.2) Lus10005315 [exp] 92 / 9e-20 AT5G13460 235 / 7e-73 IQ-domain 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF00612 [poplar] [flax] IQ IQ calmodulin-binding motif CL0220 [poplar] [flax] PF13178 [poplar] [flax] DUF4005 Protein of unknown function (DUF4005)
Representative CDS sequence Show only first row Show all	>Potri.019G095700.2 pacid=42774532 polypeptide=Potri.019G095700.2.p locus=Potri.019G095700 ID=Potri.019G095700.2.v4.1 annot-version=v4.1 ATGGGAAAGAAAGGGAGTTGGTTTTCAGCAATCAAGAGGGTCTTTTCACCCCACTCCAAGGACAAACTAGCTAGTGAATCAGATAAGAGAAGCACGAAAG AAAAGAAGAAGAAGGGTCTTGGAAAACTAAGACATGGAGAGACCACTTCATTCATTCCCCTGTTTAGAGAACCAAGCAGTATTGAGAAAATTTTGGATGA GGCTGAAAGAGAGAATAAATTAATTTTCAGGCCTCCAACGCCTCCTGAGGAACTGACAACACCACCTTTTGTGCCTCCAAGAGCCGATTCTCCGAGGGTT GCTTCTCAAAGAGTCACCTCTCCAAGAGCTGCTACTCCAAGAGCTGTTTCCCCTAGAGCGGCATCTCCAAGGGTTGCTTCCCCTAGAGCAGCTTCTCCTA GGAATGCTCAACGCCATAAGGAGATATATTACAGACCAGAACCAACTCTAAGAAACCATCATGCTTCGGCTACCAAGATCCAAGCAGCCTATAGAGGCTA TGTTGCAAGGAGGAGCTTCAGAGCACTGAAGGGTCTTGTGAGGCTTCAAGGAGTGATAAGAGGACAGAATGTGAAGCGGCAGACAATGAATGCGATGAAA CACATGCAGCTCTTGGTGCGGGTCCAGTCTCAGATTCAGTCTCGGAGGATCCAGATGTTAGAAAACCAAGCACGACGTCAAGCTCAAAACAGAAATGATA AAGAAGTGGATAGTACCTTGGGCAAATGGGGCCAGTTGTCTGAGGCAGGTAATAACGAAGACTGGGATGACAGCGTGCTGACAAAGGAGGAAATTGACGC AAGGTTGCAGAAAAGGGTGGAGGCAGTCGTCAAGAGAGAAAGAGCCATGGCTTATGCATATTCCCACCAGCTGTGGAAAGCCACTCCAAAATCTGCTCAG TCAGCTCTAATGGATATCCGTTCCAATGGGTTTCCATGGTGGTGGAACTGGTTAGAGCGTCAGCTACCTCCAACTAATCCTCCTGAAAGCCAAGCCTTGA GGAATTTTCAACTTACACCACCAAGGCCACGTTCCGATATGAAGGCTAGCCCTAGGCCCCCATCCAGGAGCCACAAGCAACAACATTTTGGGTTTGATAA TATGGATACTCCAACACCGAGATCCTCAAAATCAACTGCTTTTGTGCCAACGAGACAAGCGCGAACTCCTCTACATAGAACACCACAAGCCAACAGCCCT AGCTTGTCAAAATATTCAATGGCAAGAGCCAGTGCAGCAAATTCTCCTTTTAACTTGCCATTGAAGGATGACGATAGCCTCATGAGCTGCCCACCATTTT CAGTGCCAAACTACATGAGCCCTACAGTTTCAGCCAAAGCCAAAGAAAGAGCTAATAGCAATCCCAAGGAGAGGTTTCCAGGGACCCCAACCAGTGAAAA GAGGAGACTGTCATTCCCTCTTACACAGGGCATTGGGTCTTTCAAGTGGAACAAAGGCTCCTTCACTAGCAAGGATTCAAGTTCTCAAAGGGGTTTAGAT AGGCATCAGTCACTTCAATCCATAGGAAACTTGAGTGTGGATTCAACCGTCTCGATGCCTGCCACGCGAAAGCCATTTAACCGATTCGTGTGA
AA sequence Show only first row Show all	>Potri.019G095700.2 pacid=42774532 polypeptide=Potri.019G095700.2.p locus=Potri.019G095700 ID=Potri.019G095700.2.v4.1 annot-version=v4.1 MGKKGSWFSAIKRVFSPHSKDKLASESDKRSTKEKKKKGLGKLRHGETTSFIPLFREPSSIEKILDEAERENKLIFRPPTPPEELTTPPFVPPRADSPRV ASQRVTSPRAATPRAVSPRAASPRVASPRAASPRNAQRHKEIYYRPEPTLRNHHASATKIQAAYRGYVARRSFRALKGLVRLQGVIRGQNVKRQTMNAMK HMQLLVRVQSQIQSRRIQMLENQARRQAQNRNDKEVDSTLGKWGQLSEAGNNEDWDDSVLTKEEIDARLQKRVEAVVKRERAMAYAYSHQLWKATPKSAQ SALMDIRSNGFPWWWNWLERQLPPTNPPESQALRNFQLTPPRPRSDMKASPRPPSRSHKQQHFGFDNMDTPTPRSSKSTAFVPTRQARTPLHRTPQANSP SLSKYSMARASAANSPFNLPLKDDDSLMSCPPFSVPNYMSPTVSAKAKERANSNPKERFPGTPTSEKRRLSFPLTQGIGSFKWNKGSFTSKDSSSQRGLD RHQSLQSIGNLSVDSTVSMPATRKPFNRFV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G59690		IQD13	IQ-domain 13 (.1)		Potri.019G095700 [exp]	0	1
AT3G59690		IQD13	IQ-domain 13 (.1)		Potri.013G127200 [exp]	2.00	0.9228
AT5G58530			Glutaredoxin family protein (....		Potri.009G075600 [exp]	8.48	0.8494
AT3G48890		MSBP2, ATMP2, A...	MEMBRANE STEROID BINDING PROTE...		Potri.015G125100 [exp]	13.60	0.7633	Pt-MP2.1
AT2G24240			BTB/POZ domain with WD40/YVTN ...		Potri.018G107600 [exp]	15.87	0.7831
AT2G41770			Protein of unknown function (D...		Potri.016G055700 [exp]	16.85	0.8354
AT5G58530			Glutaredoxin family protein (....		Potri.001G280400 [exp]	17.66	0.8199
AT2G43160			ENTH/VHS family protein (.1.2....		Potri.002G231100 [exp]	18.02	0.8025
AT1G48760		PAT4, DELTA-ADR	PROTEIN-AFFECTED TRAFFICKING 4...		Potri.015G045600 [exp]	20.00	0.7623
AT5G23450		ATLCBK1	long-chain base (LCB) kinase 1...		Potri.010G255600 [exp]	20.12	0.7346
AT3G16630		ATKINESIN-13A, ...	P-loop containing nucleoside t...		Potri.008G223000 [exp]	22.04	0.8127

Compare expression of checked genes

Potri.019G095700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.