Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44480 182 / 4e-50 COG1, RPP10, RPP1 recognition of peronospora parasitica 1, Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G38350 171 / 1e-46 Disease resistance protein (NBS-LRR class) family (.1) AT1G63750 171 / 3e-46 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3) AT5G17680 169 / 1e-45 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G18360 166 / 1e-44 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G38340 160 / 1e-42 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G12010 159 / 3e-42 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G44510 157 / 8e-42 TAO1 target of AVRB operation1 (.1) AT2G16870 157 / 2e-41 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G38850 156 / 2e-41 Disease resistance protein (TIR-NBS-LRR class) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G097100 [exp] 538 / 0 AT4G12010 521 / 8e-165 Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.019G097800 [exp] 534 / 2e-180 AT5G17680 512 / 3e-160 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G098900 [exp] 522 / 2e-176 AT5G17680 477 / 6e-148 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G098700 [exp] 507 / 4e-173 AT5G17680 379 / 3e-114 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G098500 [exp] 499 / 1e-169 AT5G17680 496 / 4e-157 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G113701 [exp] 429 / 4e-139 AT5G17680 596 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G068200 [exp] 309 / 2e-95 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G068300 [exp] 291 / 6e-89 AT5G17680 580 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G010800 [exp] 275 / 7e-83 AT5G17680 592 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041078 [exp] 189 / 6e-53 AT5G17680 399 / 6e-126 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10030345 [exp] 175 / 9e-48 AT5G17680 528 / 5e-168 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10005588 [exp] 171 / 3e-46 AT5G17680 499 / 2e-156 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10016029 [exp] 162 / 2e-43 AT4G12010 451 / 2e-138 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10026201 [exp] 162 / 3e-43 AT5G17680 511 / 1e-160 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10017420 [exp] 159 / 4e-43 AT1G69550 164 / 1e-42 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10001537 [exp] 154 / 5e-41 AT5G44510 175 / 1e-45 target of AVRB operation1 (.1) Lus10015350 [exp] 154 / 2e-40 AT4G12010 422 / 2e-127 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10038249 [exp] 152 / 5e-40 AT5G17680 445 / 4e-137 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10010223 [exp] 152 / 9e-40 AT5G17680 218 / 6e-58 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF07725 [poplar] [flax] LRR_3 Leucine Rich Repeat CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.019G095866.2 pacid=42773555 polypeptide=Potri.019G095866.2.p locus=Potri.019G095866 ID=Potri.019G095866.2.v4.1 annot-version=v4.1 ATGATATTGGATGGTCTTCGATTTCTCGATTTCGATCACGTAGTAGATAAAATGCACCTTCCTCCTACTGGCCTCGAATATCTTCCTAATAAGCTGAGAT ATTTGCAATGGAATGGATTCCCTTCGAAATCCTTGCCGCCATCTTTTTGTGCTGAACACCTTGTCGAGCTTGACCTAAGGAAAAGCAAGCTTGTAAAACT TTGGACAGGAGTAAAGGATGTTGGGAATTTAAGAAGAATTGACCTATCTGACTCTCCATATTTGACGGAATTGCCAGATCTATCAATGGCCAAAAATCTA GTGTCCTTAATACTTGTGGACTGTCCAAGTTTAACTGAGGTTCCGTCATCTCTTCAATATCTTGACAAGCTGGAAAAAATTGATCTCTATCGTTGCTATA ATCTTAGAAGTTTTCCAATGCTTTATTCAAAGGTTCTCAGATACCTTGAAATAAATCGGTGCCTAGATGTGACCACGTGTCCAACGATTTCACAAAATAT GGAATTGTTAATATTGGAACAAACTTCAATCAAAGAAGTTCCACAATCAGTTGCTAGCAAGTTGGAATTACTTGATCTAAGTGGTTGCTCAAAGATGACC AAGTTTCCGGAGAATTTAGAGGATATAGAAGATTTAGATCTAAGCGGAACCGCTATTAAAGAGGTGCCCTCATCAATCCAGTTTCTCACAAGCCTCTGCT CGTTGGATATGAATGGTTGCTCAAAACTTGAGAGCTTCTCAGAAATTACAGTGCCTATGAAATCTTTGCAGCATCTTAACTTGAGTAAATCAGGCATTAA AGAGATACCTTTGATATCATTTAAGCATATGATATCTTTGACGTTTCTATATTTAGATGGAACGCCTATTAAAGAGCTACCCTTGTCAATCAAAGATATG GTATGTTTGCAACATCTGTCTTTGACGGGAACGCCTATTAAAGCGTTACCTGAGCTTCCCCCTTCGCTGAGGAAGATAACAACACATGACTGTGCATCAC TAGAAACCGTGACATCAATCATCAATATCAGCAGTTTATGGCATGGATTGGATTTTACAAATTGCTTCAAATTGGATCAGAAACCACTGGTAGCAGCAAT GCATTTGAAAATTCAGGTATCTCTCTTTATTTCTTCTCTCTTTCTAGCTTGCTTCATCACAATTTTGAAATGTGACTTTTGTGTTACAGTCCGGAGAGGA GATCCCACGTGGCAGAATTCAAATGGTTCTACCGGGGAGTGA
AA sequence Show only first row Show all	>Potri.019G095866.2 pacid=42773555 polypeptide=Potri.019G095866.2.p locus=Potri.019G095866 ID=Potri.019G095866.2.v4.1 annot-version=v4.1 MILDGLRFLDFDHVVDKMHLPPTGLEYLPNKLRYLQWNGFPSKSLPPSFCAEHLVELDLRKSKLVKLWTGVKDVGNLRRIDLSDSPYLTELPDLSMAKNL VSLILVDCPSLTEVPSSLQYLDKLEKIDLYRCYNLRSFPMLYSKVLRYLEINRCLDVTTCPTISQNMELLILEQTSIKEVPQSVASKLELLDLSGCSKMT KFPENLEDIEDLDLSGTAIKEVPSSIQFLTSLCSLDMNGCSKLESFSEITVPMKSLQHLNLSKSGIKEIPLISFKHMISLTFLYLDGTPIKELPLSIKDM VCLQHLSLTGTPIKALPELPPSLRKITTHDCASLETVTSIINISSLWHGLDFTNCFKLDQKPLVAAMHLKIQVSLFISSLFLACFITILKCDFCVTVRRG DPTWQNSNGSTGE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G44480		COG1, RPP10, RP...	recognition of peronospora par...		Potri.019G095866 [exp]	0	1
AT4G11170			Disease resistance protein (TI...		Potri.019G095932 [exp]	1.41	0.9473
AT4G16860		RPP5, RPP4	recognition of peronospora par...		Potri.019G097300 [exp]	2.00	0.9165
AT5G36930			Disease resistance protein (TI...		Potri.019G003942 [exp]	2.44	0.9002
AT3G47570			Leucine-rich repeat protein ki...		Potri.003G150000 [exp]	4.47	0.8767
AT4G01550	NAC	ANAC069, NTM2	NAC with Transmembrane Motif 2...		Potri.002G181800 [exp]	7.74	0.8296
					Potri.003G184501 [exp]	8.66	0.8118
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Potri.001G037000 [exp]	8.94	0.8361
AT5G36930			Disease resistance protein (TI...		Potri.019G001314 [exp]	9.89	0.8272
AT4G00770			unknown protein		Potri.014G077400 [exp]	13.85	0.7556
AT4G11170			Disease resistance protein (TI...		Potri.019G097580 [exp]	16.12	0.8005

Compare expression of checked genes

Potri.019G095866 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.