Plant FIBer expression Database

Potri.019G096500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G43780 82 / 1e-22 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G096700
[exp]
108 / 4e-33 AT2G43780 82 / 1e-22 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037305
[exp]
86 / 2e-24 AT2G43780 91 / 4e-26 unknown protein
Lus10035718
[exp]
86 / 2e-24 AT2G43780 91 / 4e-26 unknown protein
PFAM info
Representative CDS sequence
>Potri.019G096500.2 pacid=42773934 polypeptide=Potri.019G096500.2.p locus=Potri.019G096500 ID=Potri.019G096500.2.v4.1 annot-version=v4.1
ATGGCTGGATTCAGTAGCCTTGCACCTAAGACCAAGAATCTGGTAGTTGCTGGAGGCTTGTCAGCATTTGTTTTTGGGGTTTATTTCTACACCATGAGAG
CTGTTGGAGGGACAGACGAACTTCAGACTGCTATTGATAAGTTTGAACAGCAGAAAAGCAAGGAAGAGTCTGAGGCAACCATCCCATCTAAGCCTTGA
AA sequence
>Potri.019G096500.2 pacid=42773934 polypeptide=Potri.019G096500.2.p locus=Potri.019G096500 ID=Potri.019G096500.2.v4.1 annot-version=v4.1
MAGFSSLAPKTKNLVVAGGLSAFVFGVYFYTMRAVGGTDELQTAIDKFEQQKSKEESEATIPSKP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G43780 unknown protein Potri.019G096500
[exp]
0 1
AT3G01790 Ribosomal protein L13 family p... Potri.001G334000
[exp]
2.23 0.9121
AT2G07340 PFD1 PREFOLDIN 1 (.1.2) Potri.006G079700
[exp]
4.24 0.9040
AT4G30220 RUXF small nuclear ribonucleoprotei... Potri.018G092200
[exp]
5.91 0.8914
AT3G22290 Endoplasmic reticulum vesicle ... Potri.016G022800
[exp]
6.78 0.8553
AT3G02560 Ribosomal protein S7e family p... Potri.006G087900
[exp]
9.00 0.9018
AT4G33865 Ribosomal protein S14p/S29e fa... Potri.014G017701
[exp]
13.26 0.8858
AT5G19180 ECR1 E1 C-terminal related 1 (.1) Potri.008G204000
[exp]
14.49 0.8760 Pt-ECR1.1
AT1G04170 EIF2 GAMMA, EIF... eukaryotic translation initiat... Potri.003G104900
[exp]
15.55 0.8699 EIF2.4
AT3G18510 unknown protein Potri.011G140300
[exp]
16.06 0.8358
AT1G05720 selenoprotein family protein (... Potri.019G112100
[exp]
17.32 0.8706

Potri.019G096500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.