Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47530 296 / 1e-97 Auxin-responsive family protein (.1) AT4G17280 282 / 4e-92 Auxin-responsive family protein (.1) AT5G35735 273 / 3e-88 Auxin-responsive family protein (.1) AT3G59070 273 / 8e-88 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT3G25290 221 / 2e-68 Auxin-responsive family protein (.1.2) AT4G12980 214 / 2e-65 Auxin-responsive family protein (.1) AT5G48750 175 / 2e-52 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT2G04850 160 / 5e-45 Auxin-responsive family protein (.1) AT3G07570 120 / 1e-30 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT3G61750 88 / 5e-19 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G118300 [exp] 726 / 0 AT5G47530 305 / 7e-101 Auxin-responsive family protein (.1) Potri.019G095800 [exp] 712 / 0 AT5G47530 310 / 7e-103 Auxin-responsive family protein (.1) Potri.019G096300 [exp] 711 / 0 AT5G47530 310 / 7e-103 Auxin-responsive family protein (.1) Potri.019G096400 [exp] 664 / 0 AT5G47530 309 / 2e-102 Auxin-responsive family protein (.1) Potri.001G031600 [exp] 661 / 0 AT5G47530 312 / 7e-104 Auxin-responsive family protein (.1) Potri.006G015000 [exp] 347 / 2e-117 AT5G47530 513 / 0.0 Auxin-responsive family protein (.1) Potri.010G156600 [exp] 345 / 1e-116 AT5G47530 497 / 2e-176 Auxin-responsive family protein (.1) Potri.016G010900 [exp] 342 / 3e-115 AT5G47530 498 / 8e-177 Auxin-responsive family protein (.1) Potri.010G156200 [exp] 322 / 8e-108 AT5G47530 472 / 1e-166 Auxin-responsive family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012350 [exp] 301 / 3e-99 AT5G35735 418 / 3e-145 Auxin-responsive family protein (.1) Lus10001734 [exp] 293 / 4e-96 AT5G47530 422 / 9e-147 Auxin-responsive family protein (.1) Lus10002274 [exp] 293 / 4e-96 AT5G47530 432 / 4e-151 Auxin-responsive family protein (.1) Lus10017564 [exp] 275 / 4e-89 AT5G47530 419 / 8e-146 Auxin-responsive family protein (.1) Lus10010498 [exp] 267 / 1e-85 AT5G47530 412 / 1e-142 Auxin-responsive family protein (.1) Lus10025877 [exp] 203 / 4e-62 AT3G25290 387 / 2e-134 Auxin-responsive family protein (.1.2) Lus10006398 [exp] 174 / 3e-51 AT5G47530 276 / 2e-91 Auxin-responsive family protein (.1) Lus10001162 [exp] 173 / 6e-50 AT2G04850 563 / 0.0 Auxin-responsive family protein (.1) Lus10001736 [exp] 167 / 1e-47 AT2G04850 559 / 0.0 Auxin-responsive family protein (.1) Lus10038225 [exp] 153 / 4e-44 AT3G25290 283 / 6e-95 Auxin-responsive family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0328 [poplar] [flax] 2heme_cytochrom PF03188 [poplar] [flax] Cytochrom_B561 Eukaryotic cytochrome b561 CL0328 [poplar] [flax] PF04526 [poplar] [flax] DUF568 Protein of unknown function (DUF568)
Representative CDS sequence Show only first row Show all	>Potri.019G096600.1 pacid=42774670 polypeptide=Potri.019G096600.1.p locus=Potri.019G096600 ID=Potri.019G096600.1.v4.1 annot-version=v4.1 ATGGCCCGTTCTGTGATTTTTCTGGTCGCCATCTTTCTTTCTTTCTGCATATTGTCATGCATAGCACAACAACAACCATGCACGACCTATAAATTTTCAA ACAACAAACAGTTCTCTTCTTACAGCGACTTGCCTGTTTTGAGCTCCTCTCTTTACTGGAACTACCATCCATTATCCAGCAGAGTTGAGGTTGCCTTCAG GCATACTGGCGTGACCGGTCGCAGATGGATTGCTTGGGCTATCAATCCAACTTCAGGAGGGATGATTGGTTCCCAAGCAATCGTTTCTTTTCAGAGAACG GATGGAAGTCTTGCGGTCTATACTTCGCCTATAACAAGTTATGGAACGCGATTGGAACAAGGAAATCTTAGCTTTCCTGTCTTGGAATTGTCCGCTACTA ATCAGAACAATGAGATGATAATCTATGCAAGCTTAGAGCTCCATGGAAACATCAGCACAGTCAATCATCTCTGGCAAGTAGGCCCAATGTCTGAAAACAC TCTAATGATGCATAGTGTTGCTCCATCCAGTCCCAACGTCAAATCCATGGGGAGTTTGGACTTCCTTTCAGGAAGGATTAAAGCGACAAGAAGTTCTTCA ACAACACTGAAAAATGTCCATGGAATATTGAACACAGTAAGCTGGGGTATTCTAATGCCTGTTGGGGGCGTCATTGCAAGATACTTGAAAAGGTTCGAAT CTGCAGGCCCTTTATGGTTCTACTTGCATGTCAGCTGTCAACTGCTGGCCTATATTCTTGGTGGTCTGTCTGGATTTGGGACTGGAATATTTCTTGGCAT AAGGTCTCATGGTATGGAACATAGCTGTCACAAAATCATCGGCATTGTCCTCTTCTGTCTTGCAACAGCGCAGGTGTTTGGTGGTCTGGTCAGACCTGAC AAAGATAGCAAGTATCGTCCCTTCTTCAACTGGTTCCACTTCCTTGCGGGTTGCTCAACACTTATCCTAAGCATATTTAACATATACAAAGGATTTGACA TATTGCACGCCGCAAGATTTTGGAGGCTTACCTACAGTGGTACAATACTAACTTTGCTACTGGTCACGCTACTATTGGAAATATGCACAAGATGGTGCCT GCCGATAACTAAGCATTCGATGTCAAATACCGTGGACAAAAACACATCCACTGTCGCTGCAGTAGCTGCAATGGAGGTTTAG
AA sequence Show only first row Show all	>Potri.019G096600.1 pacid=42774670 polypeptide=Potri.019G096600.1.p locus=Potri.019G096600 ID=Potri.019G096600.1.v4.1 annot-version=v4.1 MARSVIFLVAIFLSFCILSCIAQQQPCTTYKFSNNKQFSSYSDLPVLSSSLYWNYHPLSSRVEVAFRHTGVTGRRWIAWAINPTSGGMIGSQAIVSFQRT DGSLAVYTSPITSYGTRLEQGNLSFPVLELSATNQNNEMIIYASLELHGNISTVNHLWQVGPMSENTLMMHSVAPSSPNVKSMGSLDFLSGRIKATRSSS TTLKNVHGILNTVSWGILMPVGGVIARYLKRFESAGPLWFYLHVSCQLLAYILGGLSGFGTGIFLGIRSHGMEHSCHKIIGIVLFCLATAQVFGGLVRPD KDSKYRPFFNWFHFLAGCSTLILSIFNIYKGFDILHAARFWRLTYSGTILTLLLVTLLLEICTRWCLPITKHSMSNTVDKNTSTVAAVAAMEV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G47530			Auxin-responsive family protei...		Potri.019G096600 [exp]	0	1
AT5G48670	MADS	FEM111, AGL80	AGAMOUS-like 80 (.1)		Potri.013G001700 [exp]	5.29	0.7219
AT1G15950		IRX4, ATCCR1, C...	IRREGULAR XYLEM 4, cinnamoyl c...		Potri.001G045000 [exp]	5.74	0.7822
AT1G49330			hydroxyproline-rich glycoprote...		Potri.009G113900 [exp]	6.00	0.7548
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Potri.019G023002 [exp]	20.73	0.6643
AT2G27500			Glycosyl hydrolase superfamily...		Potri.004G097400 [exp]	21.90	0.6764
AT2G20650			RING/U-box superfamily protein...		Potri.001G400600 [exp]	22.91	0.6984
AT5G57510			unknown protein		Potri.018G006800 [exp]	24.91	0.6959
					Potri.010G084600 [exp]	26.85	0.6571
AT1G79640			Protein kinase superfamily pro...		Potri.003G186700 [exp]	35.00	0.6343
					Potri.010G000901 [exp]	47.13	0.6289

Compare expression of checked genes

Potri.019G096600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.