Plant FIBer expression Database

Potri.019G096700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G43780 82 / 1e-22 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G096500
[exp]
108 / 3e-33 AT2G43780 82 / 1e-22 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037305
[exp]
86 / 2e-24 AT2G43780 91 / 4e-26 unknown protein
Lus10035718
[exp]
86 / 2e-24 AT2G43780 91 / 4e-26 unknown protein
PFAM info
Representative CDS sequence
>Potri.019G096700.2 pacid=42774255 polypeptide=Potri.019G096700.2.p locus=Potri.019G096700 ID=Potri.019G096700.2.v4.1 annot-version=v4.1
ATGGCTGGATTCAGTAGCCTTGCACCTAAGACCAAGAATCTGGTAGTTGCTGGAGGCTTGTCAGCATTTGTTTTTGGGGTTTATTTCTACACCATGAGAG
CTGTTGGAGGGACAGACGAACTTCAGACTGCTATTGATAAGTTTGAACAGCAGAAAAGCAAGGAAGAGTCTGAGGCAACCATCCCATCTAAGGCTTGA
AA sequence
>Potri.019G096700.2 pacid=42774255 polypeptide=Potri.019G096700.2.p locus=Potri.019G096700 ID=Potri.019G096700.2.v4.1 annot-version=v4.1
MAGFSSLAPKTKNLVVAGGLSAFVFGVYFYTMRAVGGTDELQTAIDKFEQQKSKEESEATIPSKA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G43780 unknown protein Potri.019G096700
[exp]
0 1
AT3G60340 alpha/beta-Hydrolases superfam... Potri.001G154600
[exp]
3.74 0.7450
AT1G11840 ATGLX1 glyoxalase I homolog (.1.2.3.4... Potri.004G013200
[exp]
14.83 0.6591 Pt-ATGLX1.1
AT2G29700 ATPH1 pleckstrin homologue 1 (.1) Potri.001G250400
[exp]
21.16 0.6502 Pt-ATPH1.2
AT2G01220 Nucleotidylyl transferase supe... Potri.010G120200
[exp]
35.49 0.6700
AT5G53530 VPS26A vacuolar protein sorting 26A (... Potri.001G222500
[exp]
36.08 0.6892
AT2G28370 Uncharacterised protein family... Potri.016G090100
[exp]
38.17 0.6398
AT1G07570 APK1A Protein kinase superfamily pro... Potri.016G094300
[exp]
42.70 0.5848
Potri.005G150300
[exp]
46.32 0.6522
AT3G08890 Protein of unknown function, D... Potri.006G104000
[exp]
54.90 0.6268
AT1G15270 Translation machinery associat... Potri.001G181800
[exp]
56.96 0.6823

Potri.019G096700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.