Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43770 646 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 148 / 6e-42 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 128 / 4e-34 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT5G64730 111 / 4e-28 Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 112 / 5e-27 Transducin/WD40 repeat-like superfamily protein (.1) AT5G52820 108 / 5e-26 WD-40 repeat family protein / notchless protein, putative (.1) AT5G23430 108 / 7e-26 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G25150 107 / 3e-25 TAF5 TBP-associated factor 5 (.1) AT5G08560 105 / 7e-25 transducin family protein / WD-40 repeat family protein (.1.2) AT1G10580 104 / 2e-24 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G128001 [exp] 203 / 9e-66 AT2G43770 196 / 2e-63 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 147 / 3e-41 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 134 / 1e-36 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 130 / 4e-35 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G306500 [exp] 119 / 5e-31 AT5G64730 489 / 2e-176 Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G087200 [exp] 114 / 8e-28 AT5G50230 801 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G087200 [exp] 107 / 6e-26 AT1G71840 515 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.009G058000 [exp] 107 / 1e-25 AT5G52820 811 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Potri.008G172800 [exp] 107 / 2e-25 AT1G10580 874 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012230 [exp] 648 / 0 AT2G43770 620 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10002860 [exp] 625 / 0 AT2G43770 617 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10003390 [exp] 241 / 2e-80 AT2G43770 236 / 6e-79 Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 139 / 3e-38 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 137 / 2e-37 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 131 / 3e-35 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 130 / 6e-35 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003855 [exp] 117 / 2e-30 AT5G64730 524 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10042076 [exp] 120 / 3e-30 AT5G50230 767 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10002090 [exp] 116 / 7e-30 AT5G64730 525 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.019G096900.1 pacid=42773789 polypeptide=Potri.019G096900.1.p locus=Potri.019G096900 ID=Potri.019G096900.1.v4.1 annot-version=v4.1 ATGCAAGTTGTGCCTAGGGAGAGTGAAAGTGCTTTGTCTGTCTCCGGTCCAAGGCCAATGGAGTGGTCTACTGTTCCATATACAGGGTCACAAGGACCTG GACATAATGGTAAGCAGCGTAGATCTAGCTTGGAATCACCTATCATGTTGCTTACTGGTCACCAGAGTGCTATATATACTATGAAGTTCAATCCAGCTGG AAATGTCATTGCATCGGGATCTCATGACAAGGAAATTTTTCTGTGGTACATGCATGGGGAATGCAAAAACTTCATGGTTATGAGAGGGCACAAAAATGCA GTTTTAGATCTTCATTGGACTGCTGATGGGTCCCAGATAATATCAGCCAGTCCTGACAAAACTGTCAGGGCATGGGATGTCGAGACCGGAAAACAGATAA AGAAAATGGCAGAACACTCCTCTTTTGTGAATTCATGTTGCCCTTCCCGTAGGGGGCCTCCACTTGTTGTAAGTGGATCTGATGATGGAACTTCAAAACT TTGGGATTTGCGCCAGAAGGGTGCCATCCAAACATTTCCAGATAAATACCAAATCACAGCTGTCAGTTTCTCTGATGCATCGGATAAGATATTCACAGGT GGTATAGATAATGATGTCAAGGTATGGGACATCCGCAAGGGTGAAGTGACCATGACACTTGAGGGCCATCAAGATATGATAACAAGTATGCAGTTGAGTC CTGATGGCTCATATCTGCTTACGAATGGCATGGACAACAAGCTTTGCATTTGGGACATGCGCCCCTATGCACCACAAAATCGATGTGTAAAGATTTTTGA AGGGCACCAACACAACTTTGAAAAGAACTTGTTAAAGTGTAGCTGGTCACCAGATGGAAGCAAGGTCACTGCTGGTAGTGCAGATCGCATGGTTTACATA TGGGACACAACTTCTCGACGCATCTTGTATAAGCTTCCTGGTCACGCTGGATCTGTCAATGAGTGTGTCTTCCACCCTACTGAGCCTATCATTGGATCAT GCAGCAGTGACAAACAGATTTATCTTGGGGAAATCTGA
AA sequence Show only first row Show all	>Potri.019G096900.1 pacid=42773789 polypeptide=Potri.019G096900.1.p locus=Potri.019G096900 ID=Potri.019G096900.1.v4.1 annot-version=v4.1 MQVVPRESESALSVSGPRPMEWSTVPYTGSQGPGHNGKQRRSSLESPIMLLTGHQSAIYTMKFNPAGNVIASGSHDKEIFLWYMHGECKNFMVMRGHKNA VLDLHWTADGSQIISASPDKTVRAWDVETGKQIKKMAEHSSFVNSCCPSRRGPPLVVSGSDDGTSKLWDLRQKGAIQTFPDKYQITAVSFSDASDKIFTG GIDNDVKVWDIRKGEVTMTLEGHQDMITSMQLSPDGSYLLTNGMDNKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSADRMVYI WDTTSRRILYKLPGHAGSVNECVFHPTEPIIGSCSSDKQIYLGEI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G43770			Transducin/WD40 repeat-like su...		Potri.019G096900 [exp]	0	1
AT5G51940		NRPE6A, NRPD6A,...	RNA polymerase Rpb6 (.1)		Potri.012G136900 [exp]	1.00	0.9570
AT3G26410		TRM11, AtTRM11	tRNA modification 11, methyltr...		Potri.001G207000 [exp]	1.41	0.9475
AT2G30280		RDM4, DMS4	DEFECTIVE IN MERISTEM SILENCIN...		Potri.019G126500 [exp]	1.73	0.9269
AT1G51200			A20/AN1-like zinc finger famil...		Potri.003G205500 [exp]	2.00	0.9256
AT4G36240	GATA	GATA7	GATA transcription factor 7 (....		Potri.005G066100 [exp]	2.23	0.9060
AT1G62280		SLAH1	SLAC1 homologue 1 (.1)		Potri.010G170050 [exp]	3.00	0.8859
AT2G39100			RING/U-box superfamily protein...		Potri.008G215200 [exp]	3.31	0.8785
AT5G56780		ATET2	ARABIDOPSIS EFFECTOR OF TRANSC...		Potri.006G150000 [exp]	3.46	0.9056
AT3G48150		CDC23, APC8	anaphase-promoting complex sub...		Potri.010G248550 [exp]	4.35	0.8561
AT4G27130			Translation initiation factor ...		Potri.011G134700 [exp]	4.89	0.8932

Compare expression of checked genes

Potri.019G096900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.