Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63750 79 / 3e-16 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3) AT1G63860 79 / 3e-16 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G45230 77 / 1e-15 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G64070 74 / 2e-14 RLM1 RESISTANCE TO LEPTOSPHAERIA MACULANS 1, Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G45060 72 / 8e-14 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G17880 72 / 1e-13 CSA1 constitutive shade-avoidance1, disease resistance protein (TIR-NBS-LRR class) (.1) AT4G14370 71 / 2e-13 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G11250 70 / 5e-13 Disease resistance protein (TIR-NBS-LRR class) (.1) AT4G19510 69 / 1e-12 Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT1G63880 68 / 2e-12 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G097100 [exp] 456 / 1e-152 AT4G12010 521 / 8e-165 Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.019G097800 [exp] 449 / 2e-149 AT5G17680 512 / 3e-160 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G098900 [exp] 404 / 6e-133 AT5G17680 477 / 6e-148 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G098700 [exp] 389 / 4e-129 AT5G17680 379 / 3e-114 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G113701 [exp] 393 / 1e-127 AT5G17680 596 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G098550 [exp] 271 / 5e-92 AT5G45230 54 / 2e-08 Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.019G095866 [exp] 194 / 5e-59 AT3G44480 182 / 3e-50 recognition of peronospora parasitica 1, Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.019G068200 [exp] 194 / 1e-55 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G010800 [exp] 182 / 1e-51 AT5G17680 592 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016029 [exp] 102 / 5e-24 AT4G12010 451 / 2e-138 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10015350 [exp] 91 / 4e-20 AT4G12010 422 / 2e-127 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10012247 [exp] 89 / 6e-20 AT5G45230 92 / 2e-20 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10001537 [exp] 86 / 2e-18 AT5G44510 175 / 1e-45 target of AVRB operation1 (.1) Lus10015648 [exp] 82 / 5e-17 AT4G12010 420 / 1e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10026201 [exp] 77 / 3e-15 AT5G17680 511 / 1e-160 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10023051 [exp] 76 / 6e-15 AT4G12010 415 / 2e-125 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10011580 [exp] 75 / 9e-15 AT5G64500 625 / 0.0 Major facilitator superfamily protein (.1) Lus10024150 [exp] 74 / 2e-14 AT1G69550 186 / 9e-49 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10005588 [exp] 72 / 1e-13 AT5G17680 499 / 2e-156 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.019G097720.1 pacid=42774732 polypeptide=Potri.019G097720.1.p locus=Potri.019G097720 ID=Potri.019G097720.1.v4.1 annot-version=v4.1 ATGGAATCTTTGCAACATCTTTACTTGAGTAAAACAGGCATTAAAGAGATACCCTCATCATTTAAGCATATGATATCTTTGATAACTCTAAAATTAGATG GAACGCCTATTAAAGAGCTACCCTTGTCAATCAAAGATAAGGTATGTTTGGAATATCTGACTTTGCATGGAACACCTATTAAAGCGTTACCTGAGCTTCC CCCTTCGCTGAGGTTTCTAACAACACATGACTGTGCATCACTAGAAACCGTGATATCAATCATCAATATCAGCAGTTTATGGTTTCGAAGGGATTTTACA AATTGCTTCAAATTGGATCAGAAACCACTGGTAGCAGCAATGCATTTGAAAATTCAGTCCGGAGAGGAGACCCCACATGGCACAATTCAAATGGTTCTAC TGGGGAGTGAAATTCCAGAATGGTTCGGTGACAAAGGAATTGGATCTTCACTCACCATACAGTTGCCCTCAAATTGTCATCTTCTCAAGGGAATTGCTTT CTGCCTTGTCTTTCTACTCCCTCTTCCATCCCAGGACATGCCTTGTGAAGTCGATGATGATTCTTATGTTCATGTATATTTTGATTGCCATGTTAAGAGT AAAAACGGTGAGAGTGATGGTGGTGATGAAATCGTCTTTGGTTCCCAGGAAAGACGTGCTCTATTATATTTATTGGAGACATGTGACTCAGATCACATGT TTCTACACTACGAGCTCGGTTTGGTAAATCATTTGCGTAAATATTCTGGCAATGAAGTTACATTTAAATTCTACCATGAAGTGTACAACCAGGGGAGGAA GTTAGGTCATGAGATCCGAAAGCCTTTCAAGTTGAAAAACTGTGGGGTGTATCTGCACTTTGATGAAAATCTACCGGCGGACACGGATCTTCCTTAA
AA sequence Show only first row Show all	>Potri.019G097720.1 pacid=42774732 polypeptide=Potri.019G097720.1.p locus=Potri.019G097720 ID=Potri.019G097720.1.v4.1 annot-version=v4.1 MESLQHLYLSKTGIKEIPSSFKHMISLITLKLDGTPIKELPLSIKDKVCLEYLTLHGTPIKALPELPPSLRFLTTHDCASLETVISIINISSLWFRRDFT NCFKLDQKPLVAAMHLKIQSGEETPHGTIQMVLLGSEIPEWFGDKGIGSSLTIQLPSNCHLLKGIAFCLVFLLPLPSQDMPCEVDDDSYVHVYFDCHVKS KNGESDGGDEIVFGSQERRALLYLLETCDSDHMFLHYELGLVNHLRKYSGNEVTFKFYHEVYNQGRKLGHEIRKPFKLKNCGVYLHFDENLPADTDLP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G63860			Disease resistance protein (TI...		Potri.019G097720 [exp]	0	1
AT5G17680			disease resistance protein (TI...		Potri.019G098700 [exp]	3.00	0.9672
AT1G62280		SLAH1	SLAC1 homologue 1 (.1)		Potri.008G084901 [exp]	3.60	0.9021
AT5G17680			disease resistance protein (TI...		Potri.019G098900 [exp]	5.47	0.9474
AT5G46470		RPS6	RESISTANT TO P. SYRINGAE 6, di...		Potri.019G097640 [exp]	5.91	0.9355
AT4G16580			Protein phosphatase 2C family ...		Potri.011G102200 [exp]	6.00	0.8951
AT1G75750		GASA1	GAST1 protein homolog 1 (.1.2)		Potri.005G239100 [exp]	6.32	0.8282	Pt-GASA1.2
AT5G17680			disease resistance protein (TI...		Potri.019G097800 [exp]	7.34	0.9286
AT4G12731			unknown protein		Potri.009G022366 [exp]	7.34	0.8541
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014342 [exp]	8.71	0.8924
AT5G22380	NAC	ANAC090	NAC domain containing protein ...		Potri.016G076000 [exp]	9.79	0.8590

Compare expression of checked genes

Potri.019G097720 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.