Plant FIBer expression Database

Potri.019G099000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G39740 461 / 2e-165 OLI7, RPL5B OLIGOCELLULA 7, ribosomal protein L5 B (.1.2)
AT3G25520 459 / 2e-164 PGY3, ATL5, OLI5, RPL5A RIBOSOMAL PROTEIN L5 A, PIGGYBACK3, OLIGOCELLULA 5, ribosomal protein L5 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G128600
[exp]
513 / 0 AT5G39740 422 / 6e-150 OLIGOCELLULA 7, ribosomal protein L5 B (.1.2)
Potri.014G197100
[exp]
497 / 1e-179 AT5G39740 471 / 2e-169 OLIGOCELLULA 7, ribosomal protein L5 B (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10043388
[exp]
466 / 4e-167 AT3G25520 471 / 2e-169 RIBOSOMAL PROTEIN L5 A, PIGGYBACK3, OLIGOCELLULA 5, ribosomal protein L5 (.1.2)
Lus10019544
[exp]
465 / 8e-167 AT3G25520 471 / 4e-169 RIBOSOMAL PROTEIN L5 A, PIGGYBACK3, OLIGOCELLULA 5, ribosomal protein L5 (.1.2)
Lus10020612
[exp]
449 / 9e-161 AT3G25520 467 / 1e-167 RIBOSOMAL PROTEIN L5 A, PIGGYBACK3, OLIGOCELLULA 5, ribosomal protein L5 (.1.2)
Lus10004874
[exp]
448 / 3e-160 AT3G25520 464 / 1e-166 RIBOSOMAL PROTEIN L5 A, PIGGYBACK3, OLIGOCELLULA 5, ribosomal protein L5 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0267 S11_L18p PF00861 Ribosomal_L18p Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
CL0267 PF14204 Ribosomal_L18_c Ribosomal L18 C-terminal region
Representative CDS sequence
>Potri.019G099000.1 pacid=42773334 polypeptide=Potri.019G099000.1.p locus=Potri.019G099000 ID=Potri.019G099000.1.v4.1 annot-version=v4.1
ATGGCCTTTGCCAAGGCGCAGAAAAGCAGGGCTTACTTCAAGAGGTATCAAGTCAAGTTTAAGAGAAGGCGAGCCGGGAAGACTGACTACAGGGCTAGGA
TTCGCCTGATTAATCAGGACAAGAACAAGTACAATACGCCTAAGTACCGATTCGTTGTCCGATTTACCAACAAGGACATTATTGCACAAATAGCATCTGC
AAGCATTGCTGGAGATATAGTCCTTGCTTCTGCTTATGCTCATGAGCTTCCTCGATATGGGCTTGAAGCTGGTCTTACAAACTATGCAGCAGCTTACTGC
ACTGGACTTCTCTTGGCTCGTCGTGTATTGAAAATGCTTGAGATGGATGATGAATATGAAGGAAATGTGGAGGCTACTGGAGAGGATTTCTCTGTTGAAC
CAGCTGATAGCAGGAGGCCATTCCGTGCCCTACTTGATGTTGGTCTGCTCAGAACCACTACTGGAAACCGTGTGTTTGGTGCCCTCAAGGGAGCTTTAGA
TGGTGGTTTAGATATTCCCCACAGTGACAAGAGGTTTGCTGGCTTTGCAAAGGACAATAAGCAGCTTGATGCTGAAGTTCACCGCAAATATATTTATGGA
GGCCATGTTGCTGCATACATGAGGACATTGATGGAGGATGAACCTGAGAAATACCAATCCCACTTTAGTGAGTACCTCAAGAGAGGAATTGATGCTGATG
GTATGGAGGCATTGTACAAGAAGGTTCATGCTGCCATTCGCGCTGATCCAACTGCAAAGAAATCAGAGAAGCAGCCACCCAAGGAGCACAAGAGGTACAA
CTTGAAGAAGCTAACCTATGAGGAAAGGAAAGCCAAGTTGGTTGAGCGATTGAATGCTCTCAACTCAGCCGCTGACGATGAAGATGATGAGTGA
AA sequence
>Potri.019G099000.1 pacid=42773334 polypeptide=Potri.019G099000.1.p locus=Potri.019G099000 ID=Potri.019G099000.1.v4.1 annot-version=v4.1
MAFAKAQKSRAYFKRYQVKFKRRRAGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIASASIAGDIVLASAYAHELPRYGLEAGLTNYAAAYC
TGLLLARRVLKMLEMDDEYEGNVEATGEDFSVEPADSRRPFRALLDVGLLRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFAKDNKQLDAEVHRKYIYG
GHVAAYMRTLMEDEPEKYQSHFSEYLKRGIDADGMEALYKKVHAAIRADPTAKKSEKQPPKEHKRYNLKKLTYEERKAKLVERLNALNSAADDEDDE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G39740 OLI7, RPL5B OLIGOCELLULA 7, ribosomal prot... Potri.019G099000
[exp]
0 1
AT3G49010 RSU2, ATBBC1 40S RIBOSOMAL PROTEIN, breast ... Potri.003G102800
[exp]
1.00 0.9752 ATBBC1.3
AT4G00100 PFL2, ATRPS13A POINTED FIRST LEAF 2, ribosoma... Potri.012G128600
[exp]
2.82 0.9712 Pt-RPS13.2
AT2G34480 Ribosomal protein L18ae/LX fam... Potri.002G057600
[exp]
3.46 0.9659 RPL18.7
AT2G32060 Ribosomal protein L7Ae/L30e/S1... Potri.002G056200
[exp]
4.24 0.9592 Pt-RPS12.2
AT3G16080 Zinc-binding ribosomal protein... Potri.003G053100
[exp]
4.89 0.9644 RPL37.2
AT5G23740 RPS11-BETA ribosomal protein S11-beta (.1... Potri.018G115400
[exp]
5.47 0.9589 Pt-RPS11.3
AT3G05560 Ribosomal L22e protein family ... Potri.013G015300
[exp]
6.00 0.9510 Pt-RPL22.3
AT5G45775 Ribosomal L5P family protein (... Potri.011G068900
[exp]
6.24 0.9544 Pt-L16.1
AT4G28360 Ribosomal protein L22p/L17e fa... Potri.016G067100
[exp]
7.41 0.9341
AT3G02560 Ribosomal protein S7e family p... Potri.016G100400
[exp]
8.06 0.9633

Potri.019G099000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.