Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10460 444 / 2e-158 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005305 [exp] 483 / 9e-174 AT5G10460 426 / 5e-151 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [poplar] [flax] HAD PF13242 [poplar] [flax] Hydrolase_like HAD-hyrolase-like CL0137 [poplar] [flax] HAD PF13344 [poplar] [flax] Hydrolase_6 Haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Potri.019G099100.2 pacid=42773331 polypeptide=Potri.019G099100.2.p locus=Potri.019G099100 ID=Potri.019G099100.2.v4.1 annot-version=v4.1 ATGCTACAGTCCTCTGAACTACAGCTTTTCCAGACCTTTAATGGCCTCCAACACATTGCTAAAACCCATCGGTTCAAGGCATGGTTTTTAGATCAATTTG GAGTACTTCATGATGGAAAACAACCTTATCCTGGTGCAATTTCAACATTGCAAAAGCTAGCTACTACCGGTGCCAAAATGGTGATTATAAGTAATTCTTC GCGGCGTGCATCTACAACAATGGAGAAAATGAAGAGTCTTGGATTTGATACTTCTTTATTTCTCGGAGCCATTACCAGTGGAGAATTAACACATCAATAT TTGCAGAGGAGAGATGATGGTTGGTTTGCAGCATTAGGAAAATCTTGCATTCACATGACTTGGAAGGGCAGAGGTGCCATATCTCTTGAGGGCTTAGGCT TACAAGTTGTTGACAAGGTTGAAGAAGCTGAGTTTGTTTTGGCTCATGGCACTGAAGCATTGGGGCTGTCTTCTGGTGCTTCTTGCCCTATGACTCTTGA GGAGCTTGAGAAAGTATTGGAGCGCTGTGCTGCTAAACAAATTCCTATGGTAGTAGCCAATCCAGACTTTGTAACTGTTGAAGCTAGAGACTTGCGAGTC ATGCCTGGTACATTGGCTGCCAAGTATGAGAAGCTTGGTGGTGAAGTGAAATGGATGGGCAAGCCAGATAAGATAATCTATAAATCTGCTATGGAATTGG CTGGTGTTGATGCTTTTGATTCTATAGCTGTGGGTGATTCTCTTCACCATGATATCAAAGGTGCAAATGCTGTTGGGATCTGGTCAGCATTTATAACCGG TGGGATTCATGCAACTGAACTTGGAGTCAATAGTTTTGGAGAAGAAGCAGCTTTATCTTCTGTGCAGGCCCTTGCATCCAAATATGATGCATACCCATCA TTTGTTTTACCATCATTTACATGGTAG
AA sequence Show only first row Show all	>Potri.019G099100.2 pacid=42773331 polypeptide=Potri.019G099100.2.p locus=Potri.019G099100 ID=Potri.019G099100.2.v4.1 annot-version=v4.1 MLQSSELQLFQTFNGLQHIAKTHRFKAWFLDQFGVLHDGKQPYPGAISTLQKLATTGAKMVIISNSSRRASTTMEKMKSLGFDTSLFLGAITSGELTHQY LQRRDDGWFAALGKSCIHMTWKGRGAISLEGLGLQVVDKVEEAEFVLAHGTEALGLSSGASCPMTLEELEKVLERCAAKQIPMVVANPDFVTVEARDLRV MPGTLAAKYEKLGGEVKWMGKPDKIIYKSAMELAGVDAFDSIAVGDSLHHDIKGANAVGIWSAFITGGIHATELGVNSFGEEAALSSVQALASKYDAYPS FVLPSFTW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G10460			Haloacid dehalogenase-like hyd...		Potri.019G099100 [exp]	0	1
AT3G02870		VTC4	Inositol monophosphatase famil...		Potri.006G014900 [exp]	1.00	0.8495
AT2G43360		BIOB, BIO2	BIOTIN AUXOTROPH B, BIOTIN AUX...		Potri.017G033300 [exp]	2.44	0.8320	Pt-BIO2.2
AT2G18280	TUB	AtTLP2	tubby like protein 2 (.1.2)		Potri.007G023400 [exp]	3.87	0.8196
AT1G06290		ATACX3, ACX3	acyl-CoA oxidase 3 (.1)		Potri.019G092600 [exp]	4.58	0.7929
AT1G67620			Lojap-related protein (.1)		Potri.008G105700 [exp]	7.48	0.7541
AT2G26110			Protein of unknown function (D...		Potri.018G053000 [exp]	10.00	0.8100
AT5G51750		ATSBT1.3	subtilase 1.3 (.1)		Potri.015G133800 [exp]	11.22	0.7952
AT1G60870		MEE9	maternal effect embryo arrest ...		Potri.016G004300 [exp]	16.43	0.7649
AT3G15690			Single hybrid motif superfamil...		Potri.001G172600 [exp]	20.00	0.7549
AT4G37760		SQE3	squalene epoxidase 3 (.1)		Potri.007G007600 [exp]	22.22	0.7544

Compare expression of checked genes

Potri.019G099100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.