Plant FIBer expression Database

Potri.019G099500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G20970 82 / 2e-19 bHLH bHLH162 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
AT1G10586 62 / 8e-12 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)
AT1G10585 57 / 4e-10 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G099400
[exp]
362 / 6e-129 AT4G20970 85 / 2e-20 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Potri.019G099300
[exp]
307 / 8e-108 AT4G20970 65 / 4e-13 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Potri.013G129800
[exp]
274 / 4e-94 AT4G20970 109 / 1e-29 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Potri.019G034700
[exp]
249 / 1e-84 AT4G20970 104 / 5e-28 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Potri.011G053400
[exp]
134 / 4e-39 AT4G20970 160 / 2e-49 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Potri.004G044400
[exp]
127 / 7e-37 AT4G20970 150 / 3e-46 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Potri.015G074500
[exp]
103 / 8e-28 AT4G20970 117 / 1e-33 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Potri.012G079100
[exp]
101 / 8e-27 AT4G20970 105 / 6e-29 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011172
[exp]
100 / 2e-26 AT4G20970 144 / 7e-44 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Lus10042128
[exp]
81 / 6e-19 AT4G20970 96 / 6e-25 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00010 HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence
>Potri.019G099500.1 pacid=42774174 polypeptide=Potri.019G099500.1.p locus=Potri.019G099500 ID=Potri.019G099500.1.v4.1 annot-version=v4.1
ATGGTTGCAAAAACTGGAGGGACAATAATGCAGAGTAGGAGTGGTAGGTCTAATATTTCTTCTACAAAAACAGAGAGGAAAGTCGTTGAGAGAAATAGGA
GAAATCAAATGAAAAGCCTTTACTCCAGTCTCAATTCTCTCCTCCCTAATCAAAACTTCAAGGAAGCACAACCTCTGCCTGATCAGATAGATCGAGCAAT
AAACTATATAAAGAGTCTGGAGGAAAAGTTGGAGAAAGCCAGGGAAAAGAAAGAAAGCTTAGCAAGAAGCAGAAAAAGATCATATACATGCACTTTTGAT
CCTATATCAAGTGCTGCATCAAAATCACCTCAGCTAAAAATCCATGAAATTGGTTCGGCTCTAGAGATAGTTTTGACAAGTGGGCTAGGTAATCAGTTCT
TATTTTATGAGATTATTAGCATTCTTCATGAAGAAGGTGTAGAAGTTGTCAGTGCTAATTTTCAAGCTCTTGGAGATTCCTTTTTCCATATAGTCCATGC
ACAGATGAAGGGATCTGCTGATGGTTTTGGAGCTGCAAGAGTAACTGAGAGGCTGAACAGGTTTATTAGTGGATCCACAAGTGAAATAGAGTTGGATTCA
GAGCTATGGGATTTTGCAGTTCATCATCCTGAGACTAATTGGGAATTCTAA
AA sequence
>Potri.019G099500.1 pacid=42774174 polypeptide=Potri.019G099500.1.p locus=Potri.019G099500 ID=Potri.019G099500.1.v4.1 annot-version=v4.1
MVAKTGGTIMQSRSGRSNISSTKTERKVVERNRRNQMKSLYSSLNSLLPNQNFKEAQPLPDQIDRAINYIKSLEEKLEKAREKKESLARSRKRSYTCTFD
PISSAASKSPQLKIHEIGSALEIVLTSGLGNQFLFYEIISILHEEGVEVVSANFQALGDSFFHIVHAQMKGSADGFGAARVTERLNRFISGSTSEIELDS
ELWDFAVHHPETNWEF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G20970 bHLH bHLH162 basic helix-loop-helix (bHLH) ... Potri.019G099500
[exp]
0 1
AT4G20970 bHLH bHLH162 basic helix-loop-helix (bHLH) ... Potri.019G099400
[exp]
1.00 0.9974
AT4G20970 bHLH bHLH162 basic helix-loop-helix (bHLH) ... Potri.019G099300
[exp]
1.41 0.9808
Potri.010G200301
[exp]
2.44 0.9272
Potri.001G236533
[exp]
6.32 0.7624
Potri.005G006000
[exp]
7.34 0.7632
AT1G14790 ATRDRP1, RDR1 RNA-dependent RNA polymerase 1... Potri.008G135800
[exp]
14.96 0.7438
AT4G01895 systemic acquired resistance (... Potri.002G190800
[exp]
21.21 0.6283
AT5G10770 Eukaryotic aspartyl protease f... Potri.018G014600
[exp]
23.13 0.7903
AT3G26040 HXXXD-type acyl-transferase fa... Potri.007G139400
[exp]
25.25 0.6984
Potri.006G183466
[exp]
25.69 0.6984

Potri.019G099500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.