Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17980 98 / 2e-23 NAC ANAC071 NAC domain containing protein 71 (.1) AT5G46590 93 / 1e-21 NAC ANAC096 NAC domain containing protein 96 (.1) AT3G17730 91 / 5e-21 NAC ANAC057 NAC domain containing protein 57 (.1) AT3G10490 87 / 1e-19 NAC ANAC051, ANAC052 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) AT1G69490 87 / 2e-19 NAC NAP, ANAC029, ATNAP Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) AT3G10480 89 / 3e-19 NAC ANAC050 NAC domain containing protein 50 (.1.2.3) AT1G65910 89 / 5e-19 NAC ANAC028 NAC domain containing protein 28 (.1) AT5G17260 87 / 1e-18 NAC ANAC086 NAC domain containing protein 86 (.1) AT5G24590 86 / 2e-18 NAC TIP, ANAC091 Arabidopsis NAC domain containing protein 91, TCV-interacting protein (.2) AT5G09330 84 / 1e-17 NAC VNI1, ANAC082 VND-interacting 1, NAC domain containing protein 82 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G099800 [exp] 416 / 7e-146 AT5G24590 103 / 3e-24 Arabidopsis NAC domain containing protein 91, TCV-interacting protein (.2) Potri.013G079700 [exp] 217 / 1e-68 AT3G10480 99 / 3e-23 NAC domain containing protein 50 (.1.2.3) Potri.003G089800 [exp] 97 / 2e-22 AT4G17980 319 / 6e-109 NAC domain containing protein 71 (.1) Potri.001G144400 [exp] 94 / 2e-21 AT4G17980 318 / 2e-108 NAC domain containing protein 71 (.1) Potri.002G154200 [exp] 91 / 3e-21 AT4G35580 169 / 5e-50 NAC transcription factor-like 9 (.1.2.3) Potri.008G081500 [exp] 92 / 7e-21 AT1G54330 316 / 1e-107 NAC domain containing protein 20 (.1) Potri.010G174600 [exp] 91 / 2e-20 AT1G54330 290 / 2e-97 NAC domain containing protein 20 (.1) Potri.017G139500 [exp] 91 / 1e-19 AT1G65910 461 / 1e-154 NAC domain containing protein 28 (.1) Potri.004G081000 [exp] 88 / 6e-19 AT1G65910 465 / 4e-156 NAC domain containing protein 28 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035373 [exp] 94 / 3e-21 AT4G17980 280 / 2e-93 NAC domain containing protein 71 (.1) Lus10030978 [exp] 91 / 3e-20 AT4G17980 273 / 6e-91 NAC domain containing protein 71 (.1) Lus10005143 [exp] 92 / 4e-20 AT1G33060 149 / 2e-39 NAC 014 (.1.2) Lus10026617 [exp] 87 / 3e-19 AT1G69490 298 / 1e-101 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) Lus10003269 [exp] 88 / 4e-19 AT3G04070 324 / 3e-109 NAC domain containing protein 47 (.1.2) Lus10022636 [exp] 87 / 4e-19 AT2G17040 287 / 6e-97 NAC domain containing protein 36 (.1) Lus10030446 [exp] 86 / 4e-19 AT1G69490 302 / 2e-103 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) Lus10020794 [exp] 89 / 5e-19 AT5G10360 449 / 8e-153 Ribosomal protein small subunit 6b, embryo defective 3010, Ribosomal protein S6e (.1.2) Lus10007377 [exp] 89 / 6e-19 AT1G65910 431 / 7e-143 NAC domain containing protein 28 (.1) Lus10042284 [exp] 86 / 7e-19 AT3G17730 348 / 1e-121 NAC domain containing protein 57 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [poplar] [flax] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Potri.019G099900.4 pacid=42773886 polypeptide=Potri.019G099900.4.p locus=Potri.019G099900 ID=Potri.019G099900.4.v4.1 annot-version=v4.1 ATGACACGCATGACAACACCTTTCGAATTTAACGTTGGAGATAGATTTAATCCGAATGATGAAGAACTAACGTATCATTATCTAATGCAAAAATTACTTG GGAATGATCACCTAGTCAGCAGAATCCCCCTACTTGATCTCTACCAGTTTGATCCGTCCGATTTACCTTATTTTGCTGGGACAGATTCAAATGATGGAGA AGGACATTTCTTTTCTCCTCTCCATACCAAGTTGGGCACAAATAACGGGAGAATCAATAGGTCAACAGGCGCTGGTTCATGGCTAGCTACAGGAAAGCAT TGTGAGATAACATCTCAACATAATGGGGAAGTGAATAGTGGTATCAGAAAGATTTATGTTTATTTTAAAGATGGGATCAAGTATGTGATGCATGAGTACA GTATACCCAACCTGAGTACTTCTCTAGTTCTGTGTAAAGTAATGAAGAAGATGCCAAGTAAGAAGAGTGGAGGAACATGTAAGAAGGTTAAAAAGAGAAA GGAGGCGGCTGAGCTGCCACTGCCAATATGTAACGAGGATAATAGCACTCTAGCATCTGGTGTAATGAAGAAGAAGATGTCAGTTAAGAAGAGTGAAGGA CCAAGTAAGAAGGTTAAAAGGACAGATGAGAAGGCTGATATGCCATATAACAAGGAAAATATTACTCCAGTACCAGATGAAGGTTCTGATTTAGAAAACT GGATTACCAGTGATAAGAGTGATTTTTCAACCTATAATAATATTATCGATAATAAAGATCAGCAGACTGAGAAATCTACCTGTGATAATGGCGGAACTCC TGCTTCTGCATACCCTGTTGCAGATTTTACAACTCTAGAAGATCAGGTAGACCCTGAAATACTACCACATCTACAATCGTTCCCTGGTTATGATCAGCTG GATTATAGCCGTTATGATCACTTCACCCAAGTTGATCCATCACTGACAGAGAAAGTCAGCACTAACAATGGCCCTGCAGGAACTTCCATGTTCGTCCCAG AGGATGATCAGTTCAACGAGCCTGAAACTTTTTGGAAATATTTGCTTTCCAATACCCTGTAA
AA sequence Show only first row Show all	>Potri.019G099900.4 pacid=42773886 polypeptide=Potri.019G099900.4.p locus=Potri.019G099900 ID=Potri.019G099900.4.v4.1 annot-version=v4.1 MTRMTTPFEFNVGDRFNPNDEELTYHYLMQKLLGNDHLVSRIPLLDLYQFDPSDLPYFAGTDSNDGEGHFFSPLHTKLGTNNGRINRSTGAGSWLATGKH CEITSQHNGEVNSGIRKIYVYFKDGIKYVMHEYSIPNLSTSLVLCKVMKKMPSKKSGGTCKKVKKRKEAAELPLPICNEDNSTLASGVMKKKMSVKKSEG PSKKVKRTDEKADMPYNKENITPVPDEGSDLENWITSDKSDFSTYNNIIDNKDQQTEKSTCDNGGTPASAYPVADFTTLEDQVDPEILPHLQSFPGYDQL DYSRYDHFTQVDPSLTEKVSTNNGPAGTSMFVPEDDQFNEPETFWKYLLSNTL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G17980	NAC	ANAC071	NAC domain containing protein ...		Potri.019G099900 [exp]	0	1
AT4G24975			Plant self-incompatibility pro...		Potri.017G144361 [exp]	1.41	0.8788
AT5G51440			HSP20-like chaperones superfam...		Potri.006G034600 [exp]	9.21	0.7964
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Potri.002G182000 [exp]	11.74	0.7923
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Potri.002G182300 [exp]	12.24	0.7790
AT3G10120			unknown protein		Potri.006G213100 [exp]	13.00	0.7657
AT5G02220			unknown protein		Potri.010G201900 [exp]	16.61	0.7985
AT5G17260	NAC	ANAC086	NAC domain containing protein ...		Potri.014G108100 [exp]	21.02	0.7485	NAC097
AT2G27880		AGO5	ARGONAUTE 5, Argonaute family ...		Potri.001G213700 [exp]	26.45	0.7565
AT1G06330			Heavy metal transport/detoxifi...		Potri.011G065600 [exp]	30.82	0.7630
AT3G03270			Adenine nucleotide alpha hydro...		Potri.017G144301 [exp]	37.81	0.7587

Compare expression of checked genes

Potri.019G099900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.