Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39390 394 / 2e-132 Leucine-rich repeat protein kinase family protein (.1) AT3G47570 338 / 1e-105 Leucine-rich repeat protein kinase family protein (.1) AT3G47580 334 / 4e-104 Leucine-rich repeat protein kinase family protein (.1) AT3G47090 331 / 9e-103 Leucine-rich repeat protein kinase family protein (.1) AT3G47110 328 / 6e-102 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 324 / 4e-100 EFR EF-TU receptor (.1) AT2G24130 224 / 5e-64 Leucine-rich receptor-like protein kinase family protein (.1) AT2G01950 187 / 1e-50 VH1, BRL2 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) AT4G39400 184 / 9e-50 DWF2, CBB2, BIN1, BRI1, ATBRI1 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) AT5G07280 182 / 5e-49 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G133100 [exp] 555 / 0 AT3G47570 761 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G228200 [exp] 470 / 9e-156 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G034000 [exp] 460 / 5e-152 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G033700 [exp] 454 / 1e-149 AT3G47570 799 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G080000 [exp] 453 / 2e-149 AT3G47570 818 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G115900 [exp] 440 / 4e-144 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G228300 [exp] 436 / 1e-142 AT3G47570 743 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G152500 [exp] 421 / 4e-137 AT3G47570 753 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G069001 [exp] 412 / 3e-134 AT3G47570 676 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030855 [exp] 357 / 1e-112 AT3G47570 790 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030903 [exp] 347 / 2e-108 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004388 [exp] 352 / 3e-108 AT3G47570 815 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10010199 [exp] 345 / 5e-108 AT3G47570 766 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004827 [exp] 347 / 1e-107 AT3G47570 812 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030846 [exp] 345 / 1e-107 AT3G47570 749 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030845 [exp] 343 / 3e-107 AT3G47570 796 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033329 [exp] 343 / 5e-107 AT3G47570 794 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011388 [exp] 341 / 1e-106 AT3G47570 757 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030636 [exp] 340 / 1e-106 AT3G47570 757 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.019G100901.1 pacid=42774206 polypeptide=Potri.019G100901.1.p locus=Potri.019G100901 ID=Potri.019G100901.1.v4.1 annot-version=v4.1 ATGAGTTTGTTGTTACTTTTCTTGCAAGTGACTGTTTTCTGTTTTTCCATCACGTTACATGGAGGAAATGAGACAGACAAACTCTCTTTGATAGCTTTCA GGGCTCAAATTATAGGAGATCCCTTTGGAGCAATGAACTCGTGGAATGAATCAGTACACTTCTGCGAGTGGTCAGGTGTTACATGTGGACGTCGGCATCA GAGAGTTGTAGAGCTTGACCTTCATTCTTATCGACTGGTGGGCAGCCTATCTCCCTCCATTGGCAACTTGAGTTTTCTTAGGGTGCTAAACCTGGAAAAC AACAGCTTCGGCCACAATATCCCTCAAGAACTGGGTCAATTGTTTCGGCTACAGATGTTGAGACTAGGGATCAACTCTTTTAGTGGTGAAATCCCAGTCA ACATCTCACGTTGCTCGAATCTCCTGAATCTTGATTTGGAGCGTAACAATCTTACTGGTAATCCTGCTTCTACATCTTCTTGGGGGATATCATTTAGGAG AGTGACGTACCAGGATCTTCTCCGAGCAACGAATGAATTCTTTTCGGTCAATTTAATTGGAGTTGGTAGTTTTGGCTCTGTCTATAAAGGAATCCTTCCT CCGGATGGAATGGCTGTTGCTGTGAAGGTACTTAACCTTCTACGAAGAGGAGCTTCCAAGAGTTTTTTGGCAGAATGCACAGCCTTGATCAACATTAGGC ATCGAAATCTTGTTAGAGTAATAACTGCATGCTCTAGCATTGACTTTCAGGGTAATGATTTTAAGGCTGTAGTTTACGAGCTCATGCCCAATGCAAGTCT AGAAGAATGGTTGCATTCGACTCATCATCAGCCAAACAACGCACATGAGCCAAGAAGTTTGAATCTCACTCAGAGGTTAGACATTTCAATTGATGTGGCT AATGCGCTCGACTATTTGCACCATCACTGCCACACGCCTATCGTTCATTGTGATTTGAAGCCGAGCAATGTTCTGTTAGATGGTGACATGACTGCTAGTG TTGGAGACTTCGGATTAGCAAGGCTTCAACCAGAAGTTTCCAGTCAATTATCTTCTTATCAGACCAGCTCTATTGGTTTAAAAGGCACCATTGGCTACGC AGCACCAGAGTATGGTATTGGAAGCGATGTGTCTACTTATGGGGATGTGTACAGCTTTGGCATCTTGTTGTTGGAGATGTTTACAGGCAAAAGACCTACA GACGACATGTTTCAAGACGGACTGAACCTTCACAATTACGTTGAAAAAGCACTGCCTGGACGTGTTACAGAAGTTGTGGATCCAATGCTTTTCAGAGAAT ACGAGGAAAGTAGTGCTCAATCCTCCTCTCATAGAAATAGGATGAACCATATTGAGAGTAGTAAAATCCTGGAATGTCTGGTTTCAATTCTGAAGATGGG AATTTCTTGTTCTGCCGAGTTGCCACCAGAGAGGATGGATATGAGCAATGTTGTGTCTGAGTTGAAGCAGATTAGGGACTCTCTTTCTCGAAGCATGATG CGTGGGCAGCATGAAATTGTTTCGGTTAGGCCACAAGATTGGTAA
AA sequence Show only first row Show all	>Potri.019G100901.1 pacid=42774206 polypeptide=Potri.019G100901.1.p locus=Potri.019G100901 ID=Potri.019G100901.1.v4.1 annot-version=v4.1 MSLLLLFLQVTVFCFSITLHGGNETDKLSLIAFRAQIIGDPFGAMNSWNESVHFCEWSGVTCGRRHQRVVELDLHSYRLVGSLSPSIGNLSFLRVLNLEN NSFGHNIPQELGQLFRLQMLRLGINSFSGEIPVNISRCSNLLNLDLERNNLTGNPASTSSWGISFRRVTYQDLLRATNEFFSVNLIGVGSFGSVYKGILP PDGMAVAVKVLNLLRRGASKSFLAECTALINIRHRNLVRVITACSSIDFQGNDFKAVVYELMPNASLEEWLHSTHHQPNNAHEPRSLNLTQRLDISIDVA NALDYLHHHCHTPIVHCDLKPSNVLLDGDMTASVGDFGLARLQPEVSSQLSSYQTSSIGLKGTIGYAAPEYGIGSDVSTYGDVYSFGILLLEMFTGKRPT DDMFQDGLNLHNYVEKALPGRVTEVVDPMLFREYEESSAQSSSHRNRMNHIESSKILECLVSILKMGISCSAELPPERMDMSNVVSELKQIRDSLSRSMM RGQHEIVSVRPQDW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G39390			Leucine-rich repeat protein ki...		Potri.019G100901 [exp]	0	1
AT3G53810			Concanavalin A-like lectin pro...		Potri.009G035800 [exp]	1.73	0.8373
AT5G45030			Trypsin family protein (.1.2)		Potri.012G121700 [exp]	2.64	0.8131
					Potri.003G025032 [exp]	4.24	0.8001
AT4G17050		UGLYAH	ureidoglycine aminohydrolase (...		Potri.003G083600 [exp]	6.92	0.7796
AT4G27290			S-locus lectin protein kinase ...		Potri.011G154400 [exp]	10.24	0.8202
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Potri.005G045800 [exp]	12.24	0.7993
AT1G07200			Double Clp-N motif-containing ...		Potri.010G188200 [exp]	12.40	0.7862
AT2G38820			Protein of unknown function (D...		Potri.007G109700 [exp]	12.40	0.7817
AT1G03055			unknown protein		Potri.005G216400 [exp]	13.41	0.7853
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Potri.016G034400 [exp]	16.12	0.7835

Compare expression of checked genes

Potri.019G100901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.