Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20725 224 / 6e-72 CAAX amino terminal protease family protein (.1) AT1G14270 58 / 9e-10 CAAX amino terminal protease family protein (.1.2.3.4) AT5G60750 45 / 4e-05 CAAX amino terminal protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G147600 [exp] 54 / 3e-08 AT1G14270 362 / 1e-124 CAAX amino terminal protease family protein (.1.2.3.4) Potri.003G133800 [exp] 44 / 6e-05 AT5G60750 461 / 6e-164 CAAX amino terminal protease family protein (.1) Potri.001G097500 [exp] 44 / 7e-05 AT5G60750 460 / 2e-163 CAAX amino terminal protease family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018585 [exp] 210 / 3e-66 AT2G20725 235 / 3e-76 CAAX amino terminal protease family protein (.1) Lus10039818 [exp] 175 / 9e-54 AT2G20725 210 / 5e-68 CAAX amino terminal protease family protein (.1) Lus10037179 [exp] 53 / 1e-07 AT1G14270 347 / 8e-121 CAAX amino terminal protease family protein (.1.2.3.4) Lus10036748 [exp] 53 / 1e-07 AT1G14270 400 / 6e-140 CAAX amino terminal protease family protein (.1.2.3.4) Lus10024708 [exp] 48 / 4e-06 AT5G60750 444 / 2e-155 CAAX amino terminal protease family protein (.1) Lus10028751 [exp] 48 / 5e-06 AT5G60750 429 / 4e-151 CAAX amino terminal protease family protein (.1) Lus10017536 [exp] 47 / 7e-06 AT5G60750 422 / 2e-148 CAAX amino terminal protease family protein (.1) Lus10032326 [exp] 45 / 4e-05 AT5G60750 402 / 1e-139 CAAX amino terminal protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0472 [poplar] [flax] Peptidase_U PF02517 [poplar] [flax] CPBP CPBP intramembrane metalloprotease
Representative CDS sequence Show only first row Show all	>Potri.019G101100.1 pacid=42773294 polypeptide=Potri.019G101100.1.p locus=Potri.019G101100 ID=Potri.019G101100.1.v4.1 annot-version=v4.1 ATGGCGCCTTATCTAACCGTTGGTATACTACCCGCCAAGTTTGGGTTCAGTTTTAACAAATCGTTGATTCAAAATCCAAACCCTCTCTATCACACCTCCA AACTCAAATTCAAATCCAATCTCGGCTTCAAATCTTCTCTCAAATGCCGCTGCATCAAGAAAGAAATCACTGATAAACCCACTGAGGAATTTTCAGTGCT TTCGTTGGATATTCCATGGGAGAGAGGGAGTATATGGAGCACTATGGCTTTGTACATGTTCAATTTTCATATCCCTTTGGGTATTGGAGGCTTGTCTATA GTTGCCAATGTATTGCATCAACCTGTTCTTGATCCTCAGACGGAAGTGTTATCACTGCTTGCAATCCAAATTTTAGAACTCGCTGCTTCTCTGCTTCTAC TTAAGAGCACTGCTAAGCCAGAATATGAGGTAGTGAGCTTCTTTAAAACTGATGAATTGTCAAAGAAGAGGAACTGGCTGCAGGCTTCATCACTAGGTTT CGGCTTTCTTGTTCTGTTGGTGTTCCTTACATCACTTGTTGCTGACAGACTAATTGGACCTAAGGCTGTGAACAACCCTATTGTGAAGGAGATTCTTCTG AGCAGCAGCATCTCGAAAGTTGCCTGCATCCTGGTTTATTGCCTTGTCACCCCCCTGCTGGAAGAAATTGTTTACAGAGGCTTTCTATTGAAATCTCTTG CCTCTACCATGAACTGGCAGCAGGCAGTTTTACTAAGCTCAGCTGTTTTTAGTGCTGCTCACTTCTCTGGTGAGAATTTTATACAGTTGTTTATAATTGG GTGTGTCCTTGGATGCTCCTATTCTTGGTCTGGGAACTTATGTTCTCCCATTCTAACACATTCCTTGTACAATGCCCTGACACTGATCATAACATATTTT AGTTAA
AA sequence Show only first row Show all	>Potri.019G101100.1 pacid=42773294 polypeptide=Potri.019G101100.1.p locus=Potri.019G101100 ID=Potri.019G101100.1.v4.1 annot-version=v4.1 MAPYLTVGILPAKFGFSFNKSLIQNPNPLYHTSKLKFKSNLGFKSSLKCRCIKKEITDKPTEEFSVLSLDIPWERGSIWSTMALYMFNFHIPLGIGGLSI VANVLHQPVLDPQTEVLSLLAIQILELAASLLLLKSTAKPEYEVVSFFKTDELSKKRNWLQASSLGFGFLVLLVFLTSLVADRLIGPKAVNNPIVKEILL SSSISKVACILVYCLVTPLLEEIVYRGFLLKSLASTMNWQQAVLLSSAVFSAAHFSGENFIQLFIIGCVLGCSYSWSGNLCSPILTHSLYNALTLIITYF S

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G20725			CAAX amino terminal protease f...		Potri.019G101100 [exp]	0	1
AT1G73470			unknown protein		Potri.015G033200 [exp]	3.60	0.9243
AT4G38160		PDE191	pigment defective 191, Mitocho...		Potri.004G209400 [exp]	4.79	0.9462
AT5G66090			unknown protein		Potri.005G109100 [exp]	5.47	0.9236
AT2G02740		WHY3, ATWHY3, P...	PLASTID TRANSCRIPTIONALLY ACTI...		Potri.010G092500 [exp]	9.79	0.9308
AT1G78630		EMB1473	embryo defective 1473, Ribosom...		Potri.011G106100 [exp]	10.58	0.9337
AT5G08400			Protein of unknown function (D...		Potri.010G255300 [exp]	11.00	0.9256
AT1G08980		ATTOC64-I, ATAM...	ARABIDOPSIS THALIANA TRANSLOCO...		Potri.013G024100 [exp]	15.87	0.9052
AT5G57030		LUT2	LUTEIN DEFICIENT 2, Lycopene b...		Potri.006G147300 [exp]	18.08	0.9328
AT3G48730		GSA2	glutamate-1-semialdehyde 2,1-a...		Potri.015G101100 [exp]	18.70	0.9258	Pt-GSA1.1
AT1G47480			alpha/beta-Hydrolases superfam...		Potri.009G104900 [exp]	19.59	0.9262

Compare expression of checked genes

Potri.019G101100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.