Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28250 367 / 2e-129 ATHEXPBETA1.6, ATEXPB3 expansin B3 (.1.2) AT2G20750 344 / 3e-120 ATHEXPBETA1.5, ATEXPB1 expansin B1 (.1) AT1G65680 213 / 8e-69 ATHEXPBETA1.4, ATEXPB2 expansin B2 (.1) AT2G45110 179 / 2e-55 ATHEXPBETA1.1, ATEXPB4 expansin B4 (.1) AT3G60570 177 / 8e-55 ATHEXPBETA1.3, ATEXPB5 expansin B5 (.1) AT1G65681 176 / 1e-54 EXPB6 beta expansin 6 (.1) AT1G12560 114 / 2e-30 ATHEXPALPHA1.26, ATEXP7, ATEXPA7 expansin A7 (.1) AT4G17030 107 / 1e-27 ATHEXPBETA3.1, ATEXPR1, AT-EXPR, ATEXLB1 expansin-like B1 (.1) AT4G38400 105 / 6e-27 ATEXPL2, ATHEXPBETA2.2, EXPL2, ATEXLA2 EXPANSIN L2, expansin-like A2 (.1) AT3G15370 104 / 1e-26 ATHEXPALPHA1.24, ATEXP12, ATEXPA12 expansin 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G134300 [exp] 453 / 2e-163 AT4G28250 402 / 2e-143 expansin B3 (.1.2) Potri.014G066300 [exp] 214 / 8e-69 AT1G65680 322 / 2e-111 expansin B2 (.1) Potri.001G112900 [exp] 114 / 3e-30 AT1G12560 364 / 5e-128 expansin A7 (.1) Potri.009G141400 [exp] 114 / 4e-30 AT4G38400 349 / 5e-122 EXPANSIN L2, expansin-like A2 (.1) Potri.001G151500 [exp] 112 / 1e-29 AT4G17030 297 / 6e-102 expansin-like B1 (.1) Potri.004G181700 [exp] 112 / 2e-29 AT4G38400 348 / 3e-122 EXPANSIN L2, expansin-like A2 (.1) Potri.001G401700 [exp] 106 / 1e-27 AT3G15370 348 / 2e-122 expansin 12 (.1) Potri.001G001100 [exp] 103 / 3e-26 AT2G03090 375 / 5e-133 EXPANSIN 15, expansin A15 (.1) Potri.003G083200 [exp] 102 / 8e-26 AT4G17030 311 / 1e-107 expansin-like B1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018583 [exp] 403 / 1e-143 AT4G28250 398 / 1e-141 expansin B3 (.1.2) Lus10039816 [exp] 402 / 4e-143 AT4G28250 402 / 3e-143 expansin B3 (.1.2) Lus10038933 [exp] 218 / 4e-70 AT1G65680 301 / 1e-102 expansin B2 (.1) Lus10036066 [exp] 203 / 3e-65 AT1G65680 286 / 1e-97 expansin B2 (.1) Lus10033700 [exp] 167 / 5e-50 AT1G65680 233 / 2e-75 expansin B2 (.1) Lus10031638 [exp] 167 / 3e-49 AT2G20770 238 / 3e-76 GCR2-like 2 (.1) Lus10040149 [exp] 128 / 8e-36 AT4G17030 221 / 2e-72 expansin-like B1 (.1) Lus10001010 [exp] 125 / 2e-34 AT4G17030 223 / 6e-73 expansin-like B1 (.1) Lus10000957 [exp] 124 / 3e-34 AT4G17030 226 / 2e-74 expansin-like B1 (.1) Lus10011012 [exp] 123 / 7e-34 AT4G17030 219 / 2e-71 expansin-like B1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [poplar] [flax] E-set PF01357 [poplar] [flax] Expansin_C Expansin C-terminal domain CL0199 [poplar] [flax] DPBB PF03330 [poplar] [flax] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Potri.019G101900.1 pacid=42774213 polypeptide=Potri.019G101900.1.p locus=Potri.019G101900 ID=Potri.019G101900.1.v4.1 annot-version=v4.1 ATGCAGCTCTTGGGGTTATATGTTGTGGTGTTCTTAAAGTGCTTTTTGGGTGTCTTTGGGCAGCAAGTTCATCCTCAACATAATGTGGCTGACTTACACT GGAAACCGGCTACTGCCACCTGGTATGGCAGTCCTGACGGTGATGGTAGTGACGGAGGGGCATGTGGGTACGGGTCATTAGTGGATGTGAAGCCATTCAG GGCCAGAGTTGGTGCAGTGAGCCCAGTACTCTTCAAGAATGGTGAAGGATGTGGGGCATGTTACAAAGTTAGGTGCCTAGACAAGAGCATATGCTCAAGA AGGGCAGTGACCATAATTGTTACAGATGAGTGTCCAGGTGGGTATTGTTCCAATGGCAACACTCACTTTGACCTTAGTGGTGCAGCCTTTGGTCGCATGG CTATTTCCGGTGAGAATGGTCAGCTCAGGAACCGAGGTGAAATCCCGGTCATTTATCGCAGGACCCCATGCAAGTACCCAGGGAAGAACATTGCCTTCCA TGTCAATGAAGGCTCAACAGATTATTGGCTATCCATTCTAGTAGAGTTTGAAGATGGTGACGGTGATGTTGGATCGATGCATATAAGAGAAGCAGGAGGC ACTGAGTGGCTAGAGATGAATCACGTATGGGGTGCAACTTGGTGTATTATCAGGGGACCCCTGAAAGGACCATTCTCCGTGAAATTAACAACACTAACAA CAGGAAGAACACTGTCTGCAAGAGAAGTGATTCCAAGAAATTGGGCTCCAAAAGCTACTTACACCTCTAGGCTCAATTTCTTCCATTAA
AA sequence Show only first row Show all	>Potri.019G101900.1 pacid=42774213 polypeptide=Potri.019G101900.1.p locus=Potri.019G101900 ID=Potri.019G101900.1.v4.1 annot-version=v4.1 MQLLGLYVVVFLKCFLGVFGQQVHPQHNVADLHWKPATATWYGSPDGDGSDGGACGYGSLVDVKPFRARVGAVSPVLFKNGEGCGACYKVRCLDKSICSR RAVTIIVTDECPGGYCSNGNTHFDLSGAAFGRMAISGENGQLRNRGEIPVIYRRTPCKYPGKNIAFHVNEGSTDYWLSILVEFEDGDGDVGSMHIREAGG TEWLEMNHVWGATWCIIRGPLKGPFSVKLTTLTTGRTLSAREVIPRNWAPKATYTSRLNFFH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G28250		ATHEXPBETA1.6, ...	expansin B3 (.1.2)		Potri.019G101900 [exp]	0	1
AT2G44745	WRKY	WRKY12	WRKY family transcription fact...		Potri.002G138900 [exp]	2.00	0.8510
AT1G59740			Major facilitator superfamily ...		Potri.004G229000 [exp]	2.82	0.7792
AT5G51670			Protein of unknown function (D...		Potri.015G131800 [exp]	4.69	0.8186
AT1G78955		CAMS1	camelliol C synthase 1 (.1)		Potri.001G049100 [exp]	10.09	0.7894
AT2G40460			Major facilitator superfamily ...		Potri.019G055800 [exp]	12.96	0.7709
AT2G31800			Integrin-linked protein kinase...		Potri.017G007800 [exp]	14.00	0.7563
AT2G44745	WRKY	WRKY12	WRKY family transcription fact...		Potri.014G050000 [exp]	16.73	0.7695
AT5G43020			Leucine-rich repeat protein ki...		Potri.014G024400 [exp]	17.32	0.7759
AT1G05065		CLE20	CLAVATA3/ESR-RELATED 20 (.1)		Potri.014G156600 [exp]	18.33	0.7442
AT1G69580	GARP		Homeodomain-like superfamily p...		Potri.008G087600 [exp]	20.83	0.7297

Compare expression of checked genes

Potri.019G101900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.