Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23145 50 / 2e-09 RALFL2 RALF-like 2 (.1) AT1G60815 42 / 3e-06 RALFL7 RALF-like 7 (.1) AT1G61566 40 / 9e-06 RALFL9 ralf-like 9 (.1) AT2G32835 40 / 2e-05 RALFL16 RALF-like 16 (.1) AT1G61563 37 / 0.0002 RALFL8 ralf-like 8 (.1) AT2G34825 36 / 0.0005 RALFL20 RALF-like 20 (.1) AT4G11510 36 / 0.0007 RALFL28 ralf-like 28 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G007600 [exp] 49 / 5e-09 AT1G61566 50 / 8e-10 ralf-like 9 (.1) Potri.018G007800 [exp] 47 / 3e-08 AT2G32835 51 / 6e-10 RALF-like 16 (.1) Potri.018G007500 [exp] 47 / 3e-08 AT1G61566 58 / 6e-13 ralf-like 9 (.1) Potri.018G007701 [exp] 47 / 3e-08 AT1G61566 58 / 6e-13 ralf-like 9 (.1) Potri.017G140066 [exp] 40 / 1e-05 AT1G23145 40 / 2e-05 RALF-like 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002260 [exp] 44 / 6e-06 AT4G11510 47 / 8e-07 ralf-like 28 (.1) Lus10002261 [exp] 43 / 8e-06 AT4G11510 / ralf-like 28 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05498 [poplar] [flax] RALF Rapid ALkalinization Factor (RALF)
Representative CDS sequence Show only first row Show all	>Potri.019G102400.1 pacid=42774010 polypeptide=Potri.019G102400.1.p locus=Potri.019G102400 ID=Potri.019G102400.1.v4.1 annot-version=v4.1 ATGTCGAAAACATTGATGGTTTTTGGGCTCGCCGTGATGGTGGGATGTGCATGTTTTGCAGAAGCGGCCGGTGTACCAACTGTTGCTGACAATAAAACTC CCTCTCCTGTGATTGGCTATGGAGCTATTGGTCGAGGAGGCAATCATGAATGCGGTCCAAAAAATCCCAAAGCATGTAACGATGTACCGGCAAATCCATA TTACAGAGGTTGTGAAAAAGAGGATCACTGCCACAATGGAGGGAGAAAGTTAATTGGAGAAGAAATTCAAGTGAATGCTCCCGTCCATTTTATACAATGA
AA sequence Show only first row Show all	>Potri.019G102400.1 pacid=42774010 polypeptide=Potri.019G102400.1.p locus=Potri.019G102400 ID=Potri.019G102400.1.v4.1 annot-version=v4.1 MSKTLMVFGLAVMVGCACFAEAAGVPTVADNKTPSPVIGYGAIGRGGNHECGPKNPKACNDVPANPYYRGCEKEDHCHNGGRKLIGEEIQVNAPVHFIQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G23145		RALFL2	RALF-like 2 (.1)		Potri.019G102400 [exp]	0	1
					Potri.008G205500 [exp]	9.48	0.6000
AT3G59530		LAP3	LESS ADHERENT POLLEN 3, Calciu...		Potri.017G027600 [exp]	66.48	0.5880
AT1G13260	AP2_ERF	EDF4, RAV1	ETHYLENE RESPONSE DNA BINDING ...		Potri.015G015501 [exp]	173.60	0.5086

Compare expression of checked genes

Potri.019G102400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.