Plant FIBer expression Database

Potri.019G102700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G08415 550 / 0 Radical SAM superfamily protein (.1)
AT2G20860 356 / 3e-121 LIP1 lipoic acid synthase 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G136000
[exp]
650 / 0 AT5G08415 566 / 0.0 Radical SAM superfamily protein (.1)
Potri.007G078400
[exp]
361 / 4e-123 AT2G20860 583 / 0.0 lipoic acid synthase 1 (.1)
Potri.005G086200
[exp]
353 / 7e-120 AT2G20860 582 / 0.0 lipoic acid synthase 1 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013451
[exp]
535 / 0 AT5G08415 536 / 0.0 Radical SAM superfamily protein (.1)
Lus10041005
[exp]
531 / 0 AT5G08415 553 / 0.0 Radical SAM superfamily protein (.1)
Lus10031630
[exp]
353 / 3e-120 AT2G20860 581 / 0.0 lipoic acid synthase 1 (.1)
Lus10033710
[exp]
209 / 3e-60 AT1G71840 489 / 2e-166 transducin family protein / WD-40 repeat family protein (.1)
Lus10001348
[exp]
66 / 2e-12 ND 78 / 3e-17
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0036 TIM_barrel PF04055 Radical_SAM Radical SAM superfamily
CL0036 PF16881 LIAS_N N-terminal domain of lipoyl synthase of Radical_SAM family
Representative CDS sequence
>Potri.019G102700.1 pacid=42773641 polypeptide=Potri.019G102700.1.p locus=Potri.019G102700 ID=Potri.019G102700.1.v4.1 annot-version=v4.1
ATGATAGAGCAATCTCTTTCAAAACCTTCATTCTCATTGTCAATTCCCATTCCTAAAGCCCCTAAATCCAAATCCTCCTTTTTTTGTTCCTATTCAAAAA
TTCGATGTGAATCTGTTGATTATCCCTCTTTGACAAAAATTGATGCAAAACACCCACAGAATTCTACCACTATCAATAATGGCTCTTCATCATCAGCGTC
TGTGGATTTGAAGAACAATGAGAAGGGCCCATACCCATATCCAGGAGGTGGAAAGATGGGGCCATACACTGGGAGGGATCTCAATGAGAAGAAGCCAGAG
TGGTTGAGGCAGAGAGCTCCTCAAGGAGAACGATTTGAAGAGGTAAAAGAATCTATCTCTCGCTTGAATCTCAACACTGTTTGCCAAGAAGCTCAATGCC
CCAATATTGGAGAGTGTTGGAATGGAGGCGGGGATGGTATTGCAACAGCAACTATTATGGTTTTGGGTGATACTTGTACCCGTGGATGTAGATTTTGTGC
TGTTAAAACCAGCAGAACCCCTCCTCCTCCTGACCCCATGGAGCCACTTAACACTGCTTTGGCTATTGCAAGTTGGGGTGTGGATTACATTGTTATAACA
AGTGTAGACCGTGATGATCTATCGGATGGGGGAAGTGGCCATTTTGCCCAAACTGTTCGAGCTATGAAGGAACTGAAGCCAGAGATCATGGTTGAATGCT
TAACTTCTGATTTCCGTGGTGACCTAAAGGCTGTAGATACTCTGGTACATTCAGGATTGGATGTGTTTGCCCACAATGTTGAGACTGTTAAACGCCTACA
ACGAATTGTTAGAGATCCCCGAGCTGGGTATGAACAGAGTTTATCAGTTTTGAAACATGCAAAAGTCAGTAAGAAGGGAATGATAACAAAAACTTCTATA
ATGTTGGGTCTGGGAGAAACTGATGATGAGGTGAAGGAAGCCATGACTGATTTAAGGGCTATAGATGTTGATATTCTAACATTTGGACAGTACTTACAGC
CCACTCCATTACATTTAACGGTTAAGGAGTATGTTTCACCTGAGAAGTTTGCTTATTGGAAGGAATATGGAGAGTCTATTGGATTCCGTTATGTGGCTAG
TGGACCTCTGGTTCGATCCTCTTACAGAGCAGGGGAACTCTTTGTCAAGACAATGGTGAAAGAAAGTGCTAAAGAAGCTGCTGCCATATCCTAG
AA sequence
>Potri.019G102700.1 pacid=42773641 polypeptide=Potri.019G102700.1.p locus=Potri.019G102700 ID=Potri.019G102700.1.v4.1 annot-version=v4.1
MIEQSLSKPSFSLSIPIPKAPKSKSSFFCSYSKIRCESVDYPSLTKIDAKHPQNSTTINNGSSSSASVDLKNNEKGPYPYPGGGKMGPYTGRDLNEKKPE
WLRQRAPQGERFEEVKESISRLNLNTVCQEAQCPNIGECWNGGGDGIATATIMVLGDTCTRGCRFCAVKTSRTPPPPDPMEPLNTALAIASWGVDYIVIT
SVDRDDLSDGGSGHFAQTVRAMKELKPEIMVECLTSDFRGDLKAVDTLVHSGLDVFAHNVETVKRLQRIVRDPRAGYEQSLSVLKHAKVSKKGMITKTSI
MLGLGETDDEVKEAMTDLRAIDVDILTFGQYLQPTPLHLTVKEYVSPEKFAYWKEYGESIGFRYVASGPLVRSSYRAGELFVKTMVKESAKEAAAIS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G08415 Radical SAM superfamily protei... Potri.019G102700
[exp]
0 1
AT2G30580 BMI1A, DRIP2 DREB2A-interacting protein 2 (... Potri.002G044100
[exp]
1.41 0.7156
AT3G55990 TBL29, ESK1 TRICHOME BIREFRINGENCE-LIKE 29... Potri.010G187500
[exp]
13.00 0.6822
AT5G07820 Plant calmodulin-binding prote... Potri.012G067100
[exp]
27.65 0.7118
AT4G25250 Plant invertase/pectin methyle... Potri.015G128500
[exp]
28.98 0.7105
AT1G80900 MRS2-10, ATMGT1 magnesium transporter 1 (.1) Potri.007G098000
[exp]
39.72 0.7021
AT3G42050 vacuolar ATP synthase subunit ... Potri.019G047800
[exp]
55.37 0.6739
Potri.006G267450
[exp]
57.13 0.6771
AT3G58600 Adaptin ear-binding coat-assoc... Potri.019G089800
[exp]
64.91 0.6132
AT3G25980 MAD2 MITOTIC ARREST-DEFICIENT 2, DN... Potri.010G055100
[exp]
70.71 0.6356 MAD2.2
Potri.007G086250
[exp]
77.45 0.6634

Potri.019G102700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.