Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	COMTL3,Pt-GSI.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35160 242 / 3e-77 O-methyltransferase family protein (.1) AT5G54160 235 / 8e-75 ATOMT1 O-methyltransferase 1 (.1) AT4G35150 211 / 4e-66 O-methyltransferase family protein (.1) AT1G77520 213 / 6e-66 O-methyltransferase family protein (.1) AT1G51990 202 / 5e-62 O-methyltransferase family protein (.1.2) AT1G63140 197 / 8e-60 O-methyltransferase family protein (.1.2) AT5G53810 184 / 6e-55 O-methyltransferase family protein (.1) AT1G77530 184 / 6e-55 O-methyltransferase family protein (.1) AT1G33030 173 / 4e-51 O-methyltransferase family protein (.1) AT3G53140 171 / 6e-50 O-methyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G136300 [exp] 471 / 2e-167 AT4G35160 246 / 8e-79 O-methyltransferase family protein (.1) Potri.013G141301 [exp] 470 / 3e-167 AT4G35160 245 / 2e-78 O-methyltransferase family protein (.1) Potri.013G143800 [exp] 470 / 3e-167 AT4G35160 245 / 2e-78 O-methyltransferase family protein (.1) Potri.009G139700 [exp] 277 / 3e-91 AT4G35160 363 / 1e-124 O-methyltransferase family protein (.1) Potri.009G139800 [exp] 263 / 4e-86 AT4G35160 343 / 4e-117 O-methyltransferase family protein (.1) Potri.019G093000 [exp] 238 / 4e-76 AT4G35160 230 / 1e-72 O-methyltransferase family protein (.1) Potri.015G003100 [exp] 232 / 2e-73 AT5G54160 583 / 0.0 O-methyltransferase 1 (.1) Potri.012G006400 [exp] 231 / 2e-73 AT5G54160 605 / 0.0 O-methyltransferase 1 (.1) Potri.013G121300 [exp] 231 / 2e-73 AT4G35160 201 / 4e-61 O-methyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025098 [exp] 261 / 4e-85 AT4G35160 343 / 6e-117 O-methyltransferase family protein (.1) Lus10023986 [exp] 259 / 2e-84 AT4G35160 338 / 6e-115 O-methyltransferase family protein (.1) Lus10023987 [exp] 247 / 3e-79 AT4G35160 325 / 3e-109 O-methyltransferase family protein (.1) Lus10032929 [exp] 214 / 3e-66 AT5G54160 601 / 0.0 O-methyltransferase 1 (.1) Lus10018628 [exp] 213 / 3e-66 AT4G35160 192 / 7e-58 O-methyltransferase family protein (.1) Lus10015576 [exp] 212 / 1e-65 AT5G54160 595 / 0.0 O-methyltransferase 1 (.1) Lus10018629 [exp] 211 / 2e-65 AT4G35160 214 / 3e-66 O-methyltransferase family protein (.1) Lus10033656 [exp] 209 / 2e-64 AT4G35150 211 / 8e-65 O-methyltransferase family protein (.1) Lus10017699 [exp] 202 / 7e-62 AT4G35150 204 / 2e-62 O-methyltransferase family protein (.1) Lus10006146 [exp] 199 / 5e-61 AT5G54160 338 / 5e-115 O-methyltransferase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00891 [poplar] [flax] Methyltransf_2 O-methyltransferase domain CL0123 [poplar] [flax] HTH PF08100 [poplar] [flax] Dimerisation Dimerisation domain
Representative CDS sequence Show only first row Show all	>Potri.019G102900.1 pacid=42774329 polypeptide=Potri.019G102900.1.p locus=Potri.019G102900 ID=Potri.019G102900.1.v4.1 annot-version=v4.1 ATGGGATCATTAGACGAAGAGGCATTACTGAGAGGCCAAGTAGAAGTATGGCAGCTCATGTTTGGCTTCGCAGAATCTATGGCGTTGAAGTGTGCGATAG AGCTAGGCATAGCAGACATCATAAATTCTCTTGGTGGTCCAGTCACTTTGAACCAGATAGCTTCAGGAATTGACTCACCTTGTGTTGACATTCCCTACCT TGCTCGAATCATGAGATTTCTGGTCCGCAAACGAGTCTTCACACAACACATTCCATCTGATGGAGGAGAGACTCTCTATGGTCTAACCGACAGTTCAAAA TGGCTATTACGTGACTCGGAGGTAAGCCTTGCGCCAATGGTTCTGATGCAAAACTATCCATGGCAACTAGCACCATGGCATTACCTCAGCCAATGTGTCA AAGAAGGTGGCATAGCTTTCAAGAAAGCTCATGGTTGTGAAATTTGGGACTTGGCCTCCCAAAATCCTGAATTCAACAGGATTTTCAATGATGCCTTGGC ATGTACTGCAAAGATCATTATGAGGGCAGTTGTATCCCATTATAAAGGTGGTTTTGATGATGTTGAGACGTTGGTGGATGTTGGAGGTGGTACAGGAGGA AATTTAGCTGAGATTGTCAAAGCCTATCCTCACATCAAAGGCATAAACTTTGATTTACCACATGTTGTGGCCGCAGCACCAGCATATAATGGGGTGTCAC ATGTTGGAGGCAGTTTTTTTGAGGCCATACCTAATGCTGATTCAATTTTTATGAAGTGGGTATTGCATGATTGGGGAGATGAAGATTGTGTAAAGATATT AAAAAACTGTCGGAAAGCAATGCCTGAGAAGACAGGAAAGCTGATTTTAGTGGAGATTGTTCTGCAACCAGAAGGAAATGGCCAATTTGGTGATATGGGA ATGGTGTCTGATCTAGTGATGTTTGCACACAGCACAGGTGGAAAAGAGAGGACTGAACTTGAATGGAAGAAATTATTAGAGGAAGGAGGGTTTCCTCGCT ACAAAATCATCAATATTCCTGCTTTACCATCAATTATTGAGGCCTATCTACAGTAA
AA sequence Show only first row Show all	>Potri.019G102900.1 pacid=42774329 polypeptide=Potri.019G102900.1.p locus=Potri.019G102900 ID=Potri.019G102900.1.v4.1 annot-version=v4.1 MGSLDEEALLRGQVEVWQLMFGFAESMALKCAIELGIADIINSLGGPVTLNQIASGIDSPCVDIPYLARIMRFLVRKRVFTQHIPSDGGETLYGLTDSSK WLLRDSEVSLAPMVLMQNYPWQLAPWHYLSQCVKEGGIAFKKAHGCEIWDLASQNPEFNRIFNDALACTAKIIMRAVVSHYKGGFDDVETLVDVGGGTGG NLAEIVKAYPHIKGINFDLPHVVAAAPAYNGVSHVGGSFFEAIPNADSIFMKWVLHDWGDEDCVKILKNCRKAMPEKTGKLILVEIVLQPEGNGQFGDMG MVSDLVMFAHSTGGKERTELEWKKLLEEGGFPRYKIINIPALPSIIEAYLQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G35160			O-methyltransferase family pro...		Potri.019G102900 [exp]	0	1	COMTL3,Pt-GSI.2
AT1G77160			Protein of unknown function (D...		Potri.002G071500 [exp]	2.64	0.9009
AT1G68470			Exostosin family protein (.1)		Potri.001G381900 [exp]	3.46	0.9331
					Potri.001G410477 [exp]	3.46	0.9389
AT5G18980			ARM repeat superfamily protein...		Potri.010G029300 [exp]	4.24	0.9305
AT5G12300			Calcium-dependent lipid-bindin...		Potri.009G070400 [exp]	4.79	0.8642
AT1G08990		PGSIP5	plant glycogenin-like starch i...		Potri.005G033500 [exp]	5.65	0.9247
AT3G15510	NAC	ATNAC2, ANAC056...	NAC-REGULATED SEED MORPHOLOGY ...		Potri.001G404400 [exp]	5.91	0.9189	Pt-ATNAC2.2
AT4G00210	AS2	LBD31	LOB domain-containing protein ...		Potri.002G148900 [exp]	6.00	0.9126
AT5G03370			acylphosphatase family (.1)		Potri.006G124966 [exp]	7.34	0.8694
AT1G17430			alpha/beta-Hydrolases superfam...		Potri.001G168600 [exp]	7.93	0.8905

Compare expression of checked genes

Potri.019G102900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.