Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03410 413 / 2e-145 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) AT1G52870 412 / 5e-144 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) AT2G14860 72 / 3e-14 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) AT4G33905 71 / 5e-14 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) AT5G43140 69 / 2e-13 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) AT5G19750 60 / 4e-10 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) AT4G14305 54 / 2e-08 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G123700 [exp] 419 / 7e-147 AT1G52870 472 / 1e-167 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Potri.001G404600 [exp] 418 / 2e-146 AT1G52870 438 / 6e-154 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Potri.009G090600 [exp] 67 / 2e-12 AT4G33905 299 / 1e-102 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Potri.001G296400 [exp] 65 / 8e-12 AT2G14860 300 / 6e-103 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Potri.010G068900 [exp] 53 / 4e-08 AT4G14305 252 / 1e-86 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Potri.006G032500 [exp] 53 / 1e-07 AT5G19750 279 / 8e-94 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Potri.016G029700 [exp] 52 / 1e-07 AT5G19750 257 / 5e-85 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Potri.018G037100 [exp] 50 / 5e-07 AT3G24570 289 / 6e-100 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Potri.011G007100 [exp] 44 / 4e-05 AT4G04470 230 / 1e-77 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018568 [exp] 447 / 1e-157 AT4G03410 439 / 4e-155 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Lus10039800 [exp] 441 / 4e-155 AT4G03410 434 / 1e-152 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Lus10043097 [exp] 399 / 6e-138 AT1G52870 505 / 2e-179 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Lus10032655 [exp] 390 / 1e-133 AT1G52870 499 / 3e-176 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Lus10002118 [exp] 72 / 3e-14 AT2G14860 292 / 6e-100 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Lus10011424 [exp] 72 / 5e-14 AT2G14860 288 / 3e-98 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Lus10018700 [exp] 63 / 8e-11 AT5G43140 253 / 2e-83 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Lus10039003 [exp] 55 / 2e-08 AT5G19750 241 / 1e-79 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Lus10011798 [exp] 53 / 4e-08 AT4G14305 262 / 1e-90 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Lus10010446 [exp] 50 / 1e-06 AT5G19750 258 / 2e-86 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04117 [poplar] [flax] Mpv17_PMP22 Mpv17 / PMP22 family
Representative CDS sequence Show only first row Show all	>Potri.019G103200.1 pacid=42774601 polypeptide=Potri.019G103200.1.p locus=Potri.019G103200 ID=Potri.019G103200.1.v4.1 annot-version=v4.1 ATGGCCACTCTTTACACGCTTCCTTCCCATCACAAATTCTCTTCGCTCACCAAAACCCACAAACCCTATTCCTCTTCTCCTTCACTTCTCCTCTCCACAA AACCCTTCACCAAATCCAACCCATCAAAGAACACAATCCTCTCAACCAAAAAGACTAGAACTTTGATCACTGGATCGCTCACAGAAGACAAAGAAGTTGT TCCAGTCAAAGATAAACCTTTGAAAGACAAAAGTAACCCTTTGCTTGTTAATGGGTCCAAAGATTCTGACCTTCTTTCATCATCTTCTTCTTCTACTGTT GAGACTGATGATGAAGAAGAGAGAATGACAAGTAGAGCTATTAATGCTACCATTGTATTGGGGTTTGGTACTCTTGCTGTCTCTAGGTTGCTTACTATTG ATCATGATTATTGGCATGGATGGACCCTTTATGAGATTCTAAGGTATTTGCCTGAGCACAATTGGATTGCATATGAACAAGCTCTCAAAGCGAACCCTGT TTTGGCCAAAATGGCAATTAGTGGGATGGTCTACTCTATAGGAGATTGGATTGCTCAATGCTATGAAGGAAAACCAATTTTCGAGTTTGACCGGACTCGC ACGTTTAGATCAGGGCTTGTTGGGTTTAGTCTACATGGATCCCTCTCTCATTATTACTATCAATTCTGTGAGGCTCTTTTTCCTTTTGAAGATTGGTGGG TGGTCCCAGCCAAAGTTGCCTTTGACCAAACAGTTTGGGCAGCACTTTGGAACAGCATCTACTATGTGGCGCTAGGTTTGTTGCGTTTTGAGTCCCCGGA CAATATTTTTAGCGAGCTGAAGGCAACGTTTTGGCTAATGTTGACTGCAGGATGGAAGCTTTGGCCATTTGCTCATTTGATTACCTATGGTGTTATCCCT CTTGAACAAAGGCTTCTTTGGGTAGATTGTGTGGAGCTCATCTGGGTGACAATACTCTCAACTTATTCGAATGAGAAATCAGAAGCTCGAATTTCTGACA CAACCTTGGAGGCAAACTCAAGCTCTTCAGGCAGTGCTGATGAGAAATAA
AA sequence Show only first row Show all	>Potri.019G103200.1 pacid=42774601 polypeptide=Potri.019G103200.1.p locus=Potri.019G103200 ID=Potri.019G103200.1.v4.1 annot-version=v4.1 MATLYTLPSHHKFSSLTKTHKPYSSSPSLLLSTKPFTKSNPSKNTILSTKKTRTLITGSLTEDKEVVPVKDKPLKDKSNPLLVNGSKDSDLLSSSSSSTV ETDDEEERMTSRAINATIVLGFGTLAVSRLLTIDHDYWHGWTLYEILRYLPEHNWIAYEQALKANPVLAKMAISGMVYSIGDWIAQCYEGKPIFEFDRTR TFRSGLVGFSLHGSLSHYYYQFCEALFPFEDWWVVPAKVAFDQTVWAALWNSIYYVALGLLRFESPDNIFSELKATFWLMLTAGWKLWPFAHLITYGVIP LEQRLLWVDCVELIWVTILSTYSNEKSEARISDTTLEANSSSSGSADEK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G03410			Peroxisomal membrane 22 kDa (M...		Potri.019G103200 [exp]	0	1
AT5G49940		ATCNFU2, NFU2	CHLOROPLAST-LOCALIZED NIFU-LIK...		Potri.003G009300 [exp]	1.00	0.9589
AT4G11570			Haloacid dehalogenase-like hyd...		Potri.001G104366 [exp]	2.44	0.9493
AT4G11600		LSC803, PHGPX, ...	glutathione peroxidase 6 (.1)		Potri.001G105200 [exp]	4.89	0.9229	PtrcGpx3_1
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Potri.001G190100 [exp]	6.92	0.9292
					Potri.005G059900 [exp]	7.07	0.9355
AT5G14570		ATNRT2.7	high affinity nitrate transpor...		Potri.001G348300 [exp]	7.21	0.9470
AT2G17270		PHT3;3	phosphate transporter 3;3 (.1)		Potri.004G207200 [exp]	7.48	0.9411
AT3G21750		UGT71B1	UDP-glucosyl transferase 71B1 ...		Potri.016G016900 [exp]	8.00	0.9401
AT1G14780			MAC/Perforin domain-containing...		Potri.008G136401 [exp]	8.48	0.9343
AT2G05620		PGR5	proton gradient regulation 5 (...		Potri.008G171000 [exp]	10.24	0.9435	PGR5.2

Compare expression of checked genes

Potri.019G103200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.