Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03560 911 / 0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G39710 255 / 8e-75 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G53700 239 / 3e-69 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G06920 239 / 3e-68 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G65560 234 / 2e-66 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 227 / 1e-65 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G04760 219 / 1e-62 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G30290 220 / 1e-61 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G05670 213 / 1e-59 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT5G64320 211 / 4e-59 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G014100 [exp] 241 / 5e-69 AT3G06920 1404 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G046000 [exp] 236 / 4e-68 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G013300 [exp] 236 / 6e-68 AT3G53700 1092 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G109500 [exp] 228 / 4e-66 AT1G09900 855 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.019G019300 [exp] 224 / 1e-64 AT3G04760 776 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.003G154800 [exp] 224 / 5e-64 AT4G20090 816 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G025600 [exp] 223 / 2e-63 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G098400 [exp] 223 / 7e-63 AT2G02150 924 / 0.0 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G105600 [exp] 221 / 2e-62 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018567 [exp] 982 / 0 AT1G03560 862 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10039799 [exp] 549 / 0 AT1G03560 473 / 5e-164 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10027916 [exp] 247 / 1e-71 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10043417 [exp] 246 / 1e-70 AT3G06920 1358 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 238 / 5e-67 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027914 [exp] 233 / 1e-66 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10006373 [exp] 233 / 2e-66 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012328 [exp] 232 / 3e-66 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10021989 [exp] 232 / 2e-64 AT5G65560 498 / 2e-157 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042529 [exp] 227 / 3e-63 AT5G65560 498 / 1e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.019G103400.2 pacid=42773404 polypeptide=Potri.019G103400.2.p locus=Potri.019G103400 ID=Potri.019G103400.2.v4.1 annot-version=v4.1 ATGAGAAGAATAACCCTTTTGAGACCTCCTCCTTCCCTTCTCCCCGCAACAACCCTTCACTCTTTTACAACTCTCCTACCCTATAACAATGGCGGGTCTT CATCAAAACATCCAAAAAAGCGACCTACGCTGACTTTCACTTCAAATTCTAGGTGGGTATTCACAGACAGCAACTATCTCCCTCCACCTGAATGGATAGA GCCCTTTAATGACCTCTCTGATATCGCCTCAAAACCCCCTCAAGACCTTAAACCCTCTCCTTGGGTTCACCAAATTATGAGTCTTTTGTTAGATGGCCCG GTGGACATGGAATCAAGATTGGATCTTTTTTGCAACAAGTTCTTGATCAAGTTATCGCCAAATTTTGTGTCTTTTGTTTTGAAATCTATGGAACTTCAAA AAAGACCTGATCTTGCTTTAAAGTTCTTTACTTGGGCCGGTAAGCAAAAGAAATATACTCATAATCTTCAATGTTATGTTTCTTCGATTGATGTTTTAGC TATAAATGGTGATTTAGATAATGTAAAGTCAGTTTTTTGTAAGTTTAGAGGAATGGGGTTTTTGATGAATGTTTCTGCTGCGAATTCTTTGATTAAGAGC TTCGGTAGTTTAGGGATGGTAGAGGAGTTGTTGTGGGTGTGGCGTGGAATGAAGGAAAATGGGGTTGAACCAAGTTTATTTACCTATAATTTTTTGCTTA ATGGTTTGGTTAATTCAGTGTTTATTGAATCCGCTGAGCGTGTTCTTGAGGTCATGGAGAACGGAAAAATTGGACCTGATGTTGTTACCTATAATACTAT GATTAAAGGCTATTGTCAGGTCGGGAAGACCCAAAAAGCATTTGAGAAGTTTAGAGATATGGAGTTGAGAAATGTGGCACCAGATAAGATTACGTATATG ACTTTGATTCAGGCGTGTTATGCGGAGGGGGATTTTGATTTGTGTTTAAGTTTATATCATGAAATGGATGAGAATGGATTGGAAATTCCGCCTCATGCTT ATAGTCTAGTTATTGGGGGGCTTTGTAAGGAGGGGAAATGTGTGGAAGGATATGCTGTTTTCGAGAAGATGATTCAGAAAGGATGTAAAGTGAACGTGGC AATATATACAGCCTTGATTGACTCAAATGCAAAATGCGGTAACATGGGAGAGGCAATGTTGCTTTTTGAAAGGATGAAAAAGGAAGGACTTGAACCAGAT GTGGTTACTTATGGGGTCGTTGTTAATTGTATGTGTAAGAGTGGGAGGTTGGATGAGGCTATGGAGTATTTGGAGTTTTGTAGAGTTAATGGAGTGGCAG TTAATGCCATGTTATATTCTAGTCTTATTGATGGCCTTGGCAAGGCTGGGAGGGTGCACGAAGCTGAGAAACTTTTTGAAGAGATGGTCAAGAAAGGATG CCCACCAGATTCATATTGCTATAATGCTCTTATTGATGCCCTTGCCAAATGTGGTAAGACCGATGAAGCATTAGCATTCTTTAAGAGAATGGAGGATGAA GGGTGCGATCAGACTGTATATACATACACCATAATGATAAATGGATTGTTCAGAGAGCATAAAAATGAAGAGGCATTGAAGATGTGGGATATGATGATAG ATAAGGGTATCACGCCAACTGCAGCTGCTTTTAGGGCTCTATCTATTGGTCTCTGTTTATCAGGCAAGGTAGCCAGAGCTTGTAAACTTTTGGATGAACT AGCACCAATGGGTGTCATTCCCGAGACAGCTTTCGAGGATATGCTCAATGTGTTGTGCAAAGCAGGCCGTATAAAAGAGGCCTGTAAGTTGGCTGATGGC TTTGTTGACAGGGGCCGGGAAATTCCAGGGAGAGTTCGCACTGTTTTAATCAATGCTTTGAGGAAAGCTGGCAATGCAGATTTGGCTTTGAAGTTGATGC ATAGCAAGATTGGGATTGGGTATGATAGAATGGGTAGTGTTAAGAGGCGAGTGAAATTTCGGATTCTTGTTGAAAGTTAA
AA sequence Show only first row Show all	>Potri.019G103400.2 pacid=42773404 polypeptide=Potri.019G103400.2.p locus=Potri.019G103400 ID=Potri.019G103400.2.v4.1 annot-version=v4.1 MRRITLLRPPPSLLPATTLHSFTTLLPYNNGGSSSKHPKKRPTLTFTSNSRWVFTDSNYLPPPEWIEPFNDLSDIASKPPQDLKPSPWVHQIMSLLLDGP VDMESRLDLFCNKFLIKLSPNFVSFVLKSMELQKRPDLALKFFTWAGKQKKYTHNLQCYVSSIDVLAINGDLDNVKSVFCKFRGMGFLMNVSAANSLIKS FGSLGMVEELLWVWRGMKENGVEPSLFTYNFLLNGLVNSVFIESAERVLEVMENGKIGPDVVTYNTMIKGYCQVGKTQKAFEKFRDMELRNVAPDKITYM TLIQACYAEGDFDLCLSLYHEMDENGLEIPPHAYSLVIGGLCKEGKCVEGYAVFEKMIQKGCKVNVAIYTALIDSNAKCGNMGEAMLLFERMKKEGLEPD VVTYGVVVNCMCKSGRLDEAMEYLEFCRVNGVAVNAMLYSSLIDGLGKAGRVHEAEKLFEEMVKKGCPPDSYCYNALIDALAKCGKTDEALAFFKRMEDE GCDQTVYTYTIMINGLFREHKNEEALKMWDMMIDKGITPTAAAFRALSIGLCLSGKVARACKLLDELAPMGVIPETAFEDMLNVLCKAGRIKEACKLADG FVDRGREIPGRVRTVLINALRKAGNADLALKLMHSKIGIGYDRMGSVKRRVKFRILVES

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G03560			Pentatricopeptide repeat (PPR-...		Potri.019G103400 [exp]	0	1
AT5G10760			Eukaryotic aspartyl protease f...		Potri.018G014500 [exp]	4.24	0.8858
AT3G22690			unknown protein		Potri.006G245300 [exp]	7.81	0.8967
AT4G34588		CPuORF2	conserved peptide upstream ope...		Potri.004G158150 [exp]	11.48	0.8559
AT2G26550		HO2	heme oxygenase 2 (.1.2.3)		Potri.014G034200 [exp]	11.74	0.8915
					Potri.001G394900 [exp]	12.96	0.8763
AT2G46150			Late embryogenesis abundant (L...		Potri.014G090900 [exp]	15.68	0.8731
AT5G54850			unknown protein		Potri.011G136600 [exp]	18.97	0.8588
AT2G39370		MAKR4	MEMBRANE-ASSOCIATED KINASE REG...		Potri.010G212800 [exp]	20.73	0.8566
AT4G24700			unknown protein		Potri.012G086000 [exp]	22.02	0.8747
AT5G08510			Pentatricopeptide repeat (PPR)...		Potri.002G175900 [exp]	26.72	0.8624

Compare expression of checked genes

Potri.019G103400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.