Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76810 975 / 0 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) AT1G76820 916 / 0 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) AT1G21160 871 / 0 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) AT1G76720 857 / 0 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) AT2G27700 621 / 0 eukaryotic translation initiation factor 2 family protein / eIF-2 family protein (.1.2) AT1G17220 113 / 4e-25 FUG1 fu-gaeri1, Translation initiation factor 2, small GTP-binding protein (.1) AT4G11160 104 / 2e-22 Translation initiation factor 2, small GTP-binding protein (.1) AT5G08650 53 / 1e-06 Small GTP-binding protein (.1) AT5G39900 49 / 2e-05 Small GTP-binding protein (.1) AT3G22980 46 / 0.0002 Ribosomal protein S5/Elongation factor G/III/V family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G039200 [exp] 1298 / 0 AT1G76810 1096 / 0.0 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) Potri.011G132100 [exp] 145 / 4e-39 AT1G76820 145 / 5e-40 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) Potri.011G132300 [exp] 145 / 4e-39 AT1G76820 145 / 5e-40 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) Potri.011G140100 [exp] 115 / 1e-25 AT1G17220 1160 / 0.0 fu-gaeri1, Translation initiation factor 2, small GTP-binding protein (.1) Potri.001G436300 [exp] 114 / 3e-25 AT1G17220 1076 / 0.0 fu-gaeri1, Translation initiation factor 2, small GTP-binding protein (.1) Potri.001G095500 [exp] 104 / 1e-22 AT4G11160 828 / 0.0 Translation initiation factor 2, small GTP-binding protein (.1) Potri.001G305300 [exp] 55 / 4e-07 AT5G08650 1063 / 0.0 Small GTP-binding protein (.1) Potri.017G079800 [exp] 49 / 2e-05 AT5G39900 999 / 0.0 Small GTP-binding protein (.1) Potri.003G109900 [exp] 48 / 4e-05 AT1G45332 1330 / 0.0 Translation elongation factor EFG/EF2 protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012856 [exp] 996 / 0 AT1G76820 1211 / 0.0 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) Lus10030500 [exp] 988 / 0 AT1G76810 1217 / 0.0 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) Lus10040355 [exp] 273 / 1e-84 AT1G76820 272 / 4e-85 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) Lus10023474 [exp] 201 / 1e-59 AT1G76810 224 / 5e-69 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) Lus10013713 [exp] 123 / 5e-28 AT1G17220 1267 / 0.0 fu-gaeri1, Translation initiation factor 2, small GTP-binding protein (.1) Lus10005581 [exp] 120 / 4e-27 AT1G17220 1080 / 0.0 fu-gaeri1, Translation initiation factor 2, small GTP-binding protein (.1) Lus10033933 [exp] 87 / 6e-17 AT4G11160 927 / 0.0 Translation initiation factor 2, small GTP-binding protein (.1) Lus10040356 [exp] 53 / 5e-08 AT1G76810 56 / 2e-10 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) Lus10035968 [exp] 57 / 6e-08 AT5G08650 1102 / 0.0 Small GTP-binding protein (.1) Lus10025694 [exp] 52 / 2e-06 AT5G08650 1009 / 0.0 Small GTP-binding protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00009 [poplar] [flax] GTP_EFTU Elongation factor Tu GTP binding domain CL0575 [poplar] [flax] EFTPs PF03144 [poplar] [flax] GTP_EFTU_D2 Elongation factor Tu domain 2 CL0575 [poplar] [flax] PF11987 [poplar] [flax] IF-2 Translation-initiation factor 2
Representative CDS sequence Show only first row Show all	>Potri.019G103600.3 pacid=42773177 polypeptide=Potri.019G103600.3.p locus=Potri.019G103600 ID=Potri.019G103600.3.v4.1 annot-version=v4.1 ATGGCTGGAAAGAAGGCATCCGGGCGTGATGATGAGAACGCGGCTGTGGGTGGTGGAGGGAAGTCAAGGAAGAAGGGGTTGGTGATTGGTAATGATGATC AGTATTCGATTGGTACTGAGTTGTCGGAGAAGAAGGGGAATTATGAGGGAGAGGAAGGGGAGGATGAGCAGGTGCCGGAAGTTGTGCTTGTTTCTGGGAA AAAGAAGTTGAAAGGGAGGAAGAGTGGTGCTGGTGGGAATACTGGTTTTAATTGGTCGAATTTTGGGTTATTGGGAGGTGGTGATGAGGATGATAATGAT GGTGATGATGAGGAGATATCCAAGTTGACTGGTGAGAAAGATAGTGATCAGGAGGAGGAGGATGAGCCGGTTGTGAGTTTTAAAGGGAAGAAAAAGGGTA AGGGCAATAAGAAGAGTGGTGGTGGTGGTGGTAGTGTGTTTAGTGCTTCGGGATTTGATGCTACCGATGATGGTGAGAATGATGGAGAGGTGATGGATAA AGATGGGGATGACGACGATGACGTGCCTGTCATTGAATTTACGGGGCAGAAGAAGAAGTCGTCAAAGGGTGGTAAGAAGGTTGCTGGGAGATTTTCATCC AAGTCTAACAAAAAGAGTGGTAATAATAAGTTTAGTGCAGCATTGCTTGATGAGAAGAGTGAAGATCAGGTGGAAGAAACTTTGAAGCATGAGAAGAAGA AGAAGAATAAGAGTGCAAGGGATGCTCAAGAAGAGGATGATTTGAATAAGATTCTTGCGGAGCTTGGTGACGCGCCACCTACTTCAAAATCCTTGGCACC ACCTCCACAAGAGGAGAAACCCAATCTTCAGCCTGAACCTGTTTCAGTTCCAGATTCTGTGGCTGAGAAGGAGGGTGAAGATGAAAAAGAAGAGTCTGCT GGTGCAAAGAAGAGGAAGAAGAAGAAGAAAGAGAAGGAGAAAGAGAAGAAGGCAGCAGCAAAGGAAGAAAGACTGGAAGAAGAAAAAGCTGAAACAAGTG AGCCAAAAAAGACTGATGCAAAGGGTAAAGGTTCTGAGAAGAAGCTTCCAAAACATGTTAGAGAGATGCAAGAGGCACTTGCTAGGCGAAAAGAAATGGA GGAGAGAAAGGCGAGGGAGGAAGAGGATAAGAGGAGGAAGGAAGAAGAGGAAAGGCTAAGGCAAGAAGAACTCGAGAGGCAAGCAGAAGAGGCTAGGCGT AGGAAGAAGGAAAGGGAAAAGGAGAGACTCTTGAAGAAGAAACAGGAAGGCAAGCTTCTAACAGGGAAGCAGAAGGAAGAACAACGGCGACTAGAGTCTA TGAGGTATCAAATACTTGCTAATGCAACTATTACCGTCCCTAATGCAGAAAGAGATGGTGGACCTACACGACGTCCTAGGTACCAGACTAGGAGGTCAAG ACCAGTGCACGATCAAGCAAATGGTATCAGGATAGAGGAACCTGTAGAAGCTAAGGAAAAAGAGCAGGAGGAGGAGGAAGTAGTCCACGAGGTCGAATCC TTAGAATTAGAGAATTTTGAGCCAGTGGAGGAAGAGAAAACAGAAGTTGCTAATGTACTTGTGGAGGATGGAATGGAGGAAGATGATGATGATGAGGAGT GGGATGCAAAGAGCTGGGATGATGTAAATCTCAATGTTAAGGGTGCATATGATGATGATGAGGATTCTGAGCCTGAACCTGTCTTGAAGAAGGAAACAAA AGCCCCTCTTGCAGCTGCACAGCCTGCAATTGCTGTGAGAAAACCTGTTACATCACAGCCAATGGACTCTCACGATGTTGAAGATAAGAAAAGTCAGGCT GGGGTCGAAGTTTCTGACAAAAACAGGAAGAAAGATGCTGCTGCGAAAAGTAAAGGAGCAGTTTCAGATGCCATCCCTCATAAAGGTGAAGAGACCCTGC GCTCACCAATTTGCTGTGTTATGGGCCATGTCGATACTGGCAAAACCAAGCTGCTGGATTATATTCGAGGTACCCATGTTCAGGAAGGGGAGGCTCGGGG TATCACACAACAGATTGGTGCAACATTCTTTCCTGTTGAGAACATACGAGACAGGACTAAGGAATTGAAAGCTGATGCAAGATTAAATGTTCCTGGTCTG CTAGTTATTGATACCCCTGGCCATGAAGCTTTCACCAATCTACGGTCACACGGTTCAGGTTTATGCGACATTGCCATTCTGGTTGTTAACATAATGCATG GCTTGGAGCCGCAAACCATAGAATCACTCAATCTTTTGAGGAAGAGGAACACGGAGTTCATTGTTGCATTAAATAAGATCGACAGACTCTATGGATGGAA AACACAACCTAATGCACCTATTAGGAAGGCATTGAAGCAGCAGTCAAAAGATGTGCAAAATGAATTCGACAGGAGGCTCATAGAGGTCATAACGCAGTTG AAGGAGCAAGGATTAAACACTGAATTGTACTATAAAAACAAGGACATGGGAGAAACTTTTAACATCGTACCTACAAGTGCGATTAGTGGAGAAGGCATTC CTGATTTGTTATTACTACTGATCCAATGGTCTCAGAAAACTATGGTTGAGAAACTCACGTTCAGAAACGAAGTGCAGTGTACGGTATTGGAGGTCAAGGT TACTAAAGGCCATGGAACAACAATTGATGTTGTGCTGGTTAATGGTGTGCTCCATGAAGGCGATCAAATTGTGTTTTGCAGCTTACAGGGTCCCATTGTT ACTACAATTCGAGCTCTGCTGACGCCTCACCCAATGCAGGAACTCCGGGTTAAGGGGACATATCTGCACCATAAGGAAATCAAGGCTGCACAAGGTATCA AGATCACTGGACAGGGCCTTGAACATGCTATTGCTGGAACTAGTCTATATGTGGTCCGGCGTGATGATGATTTGGAAGAGGTCAAGGAATCTGCAATGCA AGACATGAAGTCAGTCACGAGTCGGATTGATAGAAGTGGCGAGGGAGTTTGTGTACAAGCATCTTCCCTTGGCTCACTGGAAGCGTTGCTTGACTTCTTG AAGTCCCTGGAACCAAGCATTCCTGTTAGTGGTATAGGCATTGGCCCAGTACATAAAAAGGATGTCATCAAGGCCAGTGTAATGCTTGAGAAGAAAAAGG AGTATGCCAACATATTGGCATTTGGTGTTGAAGTGACACCTGAGGCTCGGGAACTTGCAGATAAACTAGGAGTGAAGATTTTCAAAGAGGATACCATTTA TTGCTTTTCTAAAGAATTCAAGGCTTACATTCAGAATCTGAAGGAGGAAAGGAAGAGGGAAGCTGCTGGTGAAGCTATTTTCCCTTGTGTTCTTGAGATA ATACCAGAGTGCATTTTCAACAAGAAAGCTCCAATCGTCTTGGGGGTTGATGTTCTTGAGGGCATACTCAAGGTTGGGACTCCAGTATGTGTTCTACAAA AAGACTTCACTGACATTGGTCGGATTGCTTCCATTCGGTTTAACGAGAAAGCAGTGGATCATGCAAGGAAAGGCCAGAAGGTGACCATAAAGATCGTAGG CACCAATCCGGAGGAGCAGCAAAAAATGCATGGCAGGCATTTCGACAATGATGATCAATTAGTCAGCCACATTACAAGAAGGTCAATCGATGTTCTTAAA GCTTATTATCGGGATGATCTGTCTATGGAAGATTGGAAGCTGGTTCTTAAATTGAAGACCCTTTTCAAGATACAGTAA
AA sequence Show only first row Show all	>Potri.019G103600.3 pacid=42773177 polypeptide=Potri.019G103600.3.p locus=Potri.019G103600 ID=Potri.019G103600.3.v4.1 annot-version=v4.1 MAGKKASGRDDENAAVGGGGKSRKKGLVIGNDDQYSIGTELSEKKGNYEGEEGEDEQVPEVVLVSGKKKLKGRKSGAGGNTGFNWSNFGLLGGGDEDDND GDDEEISKLTGEKDSDQEEEDEPVVSFKGKKKGKGNKKSGGGGGSVFSASGFDATDDGENDGEVMDKDGDDDDDVPVIEFTGQKKKSSKGGKKVAGRFSS KSNKKSGNNKFSAALLDEKSEDQVEETLKHEKKKKNKSARDAQEEDDLNKILAELGDAPPTSKSLAPPPQEEKPNLQPEPVSVPDSVAEKEGEDEKEESA GAKKRKKKKKEKEKEKKAAAKEERLEEEKAETSEPKKTDAKGKGSEKKLPKHVREMQEALARRKEMEERKAREEEDKRRKEEEERLRQEELERQAEEARR RKKEREKERLLKKKQEGKLLTGKQKEEQRRLESMRYQILANATITVPNAERDGGPTRRPRYQTRRSRPVHDQANGIRIEEPVEAKEKEQEEEEVVHEVES LELENFEPVEEEKTEVANVLVEDGMEEDDDDEEWDAKSWDDVNLNVKGAYDDDEDSEPEPVLKKETKAPLAAAQPAIAVRKPVTSQPMDSHDVEDKKSQA GVEVSDKNRKKDAAAKSKGAVSDAIPHKGEETLRSPICCVMGHVDTGKTKLLDYIRGTHVQEGEARGITQQIGATFFPVENIRDRTKELKADARLNVPGL LVIDTPGHEAFTNLRSHGSGLCDIAILVVNIMHGLEPQTIESLNLLRKRNTEFIVALNKIDRLYGWKTQPNAPIRKALKQQSKDVQNEFDRRLIEVITQL KEQGLNTELYYKNKDMGETFNIVPTSAISGEGIPDLLLLLIQWSQKTMVEKLTFRNEVQCTVLEVKVTKGHGTTIDVVLVNGVLHEGDQIVFCSLQGPIV TTIRALLTPHPMQELRVKGTYLHHKEIKAAQGIKITGQGLEHAIAGTSLYVVRRDDDLEEVKESAMQDMKSVTSRIDRSGEGVCVQASSLGSLEALLDFL KSLEPSIPVSGIGIGPVHKKDVIKASVMLEKKKEYANILAFGVEVTPEARELADKLGVKIFKEDTIYCFSKEFKAYIQNLKEERKREAAGEAIFPCVLEI IPECIFNKKAPIVLGVDVLEGILKVGTPVCVLQKDFTDIGRIASIRFNEKAVDHARKGQKVTIKIVGTNPEEQQKMHGRHFDNDDQLVSHITRRSIDVLK AYYRDDLSMEDWKLVLKLKTLFKIQ

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G76810			eukaryotic translation initiat...		Potri.019G103600 [exp]	0	1
AT2G22795			unknown protein		Potri.007G008600 [exp]	2.00	0.9469
AT5G36740			Acyl-CoA N-acyltransferase wit...		Potri.005G211100 [exp]	6.00	0.9273
AT5G36740			Acyl-CoA N-acyltransferase wit...		Potri.002G051400 [exp]	6.32	0.9320
AT4G36520			Chaperone DnaJ-domain superfam...		Potri.005G120700 [exp]	9.79	0.9242
AT5G64150			RNA methyltransferase family p...		Potri.001G003632 [exp]	10.67	0.8563
AT5G50740			Heavy metal transport/detoxifi...		Potri.016G006600 [exp]	11.48	0.8954
AT1G06530		PMD2	peroxisomal and mitochondrial ...		Potri.002G060200 [exp]	11.74	0.8938
AT5G52552		CPuORF14	conserved peptide upstream ope...		Potri.004G080000 [exp]	11.95	0.8399
AT5G55860			Plant protein of unknown funct...		Potri.016G005200 [exp]	13.71	0.8757
AT2G25290		Phox1	Phox1, Octicosapeptide/Phox/Be...		Potri.018G023500 [exp]	15.68	0.8516

Compare expression of checked genes

Potri.019G103600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.