Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11120 120 / 2e-35 unknown protein AT1G09812 71 / 2e-16 unknown protein AT4G28170 67 / 8e-15 unknown protein AT1G58007 66 / 1e-14 unknown protein AT5G65660 41 / 4e-05 hydroxyproline-rich glycoprotein family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G037200 [exp] 151 / 2e-47 AT1G11120 147 / 9e-46 unknown protein Potri.011G045900 [exp] 140 / 3e-43 AT1G11120 133 / 2e-40 unknown protein Potri.004G224200 [exp] 89 / 3e-23 AT1G09812 118 / 4e-35 unknown protein Potri.003G006900 [exp] 86 / 8e-22 AT1G09812 105 / 6e-30 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039796 [exp] 142 / 3e-44 AT1G11120 122 / 3e-36 unknown protein Lus10018462 [exp] 121 / 7e-36 AT1G11120 122 / 3e-36 unknown protein Lus10011221 [exp] 113 / 2e-32 AT1G11120 121 / 8e-36 unknown protein Lus10018564 [exp] 88 / 5e-23 AT1G11120 74 / 1e-17 unknown protein Lus10035787 [exp] 62 / 2e-12 AT1G09812 96 / 8e-26 unknown protein Lus10037361 [exp] 61 / 4e-12 AT1G09812 97 / 2e-26 unknown protein Lus10039633 [exp] 39 / 0.0003 AT5G65660 147 / 1e-46 hydroxyproline-rich glycoprotein family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.019G103800.1 pacid=42773141 polypeptide=Potri.019G103800.1.p locus=Potri.019G103800 ID=Potri.019G103800.1.v4.1 annot-version=v4.1 ATGGGCGTGGAAGATAGTTGGGATACAGTAGTGTCACCACCAACAACAACGTTAGTGCCTTTGAATTTAGAAAGAGATGATCATTGGAGACATTTTGATA ATTCAGTGAATGCTGTGTCTTTTGGGTTTGTAGCTACTGCTATATTGATATCTATGTTCCTTGTTATGGCTATCTTTGAAAGGTTTTTAAGGCCAAGATC ATTGTCTTCCTCTGCTGGTACTAATGGCAGTTCTTCTTCTTCTTCTAATGATCTTGAAGCTCAAGTTGTTTTCCATGGCAAGCTTGATTTCCCATCTCTA AAAATGACAGTTTATGAGAAAGGGGTATCAGTCCTGATGCCCGGTGATGATGTTCCTACCTTCCTTGCACACCCAGCTCCCGCACCCTGCCGTCCCGAGC GCATGATCATACAACCACTCCAACAACATAGCCTATGCCACAGCTTCACCTCAACCTCTACTTCAAGCTAA
AA sequence Show only first row Show all	>Potri.019G103800.1 pacid=42773141 polypeptide=Potri.019G103800.1.p locus=Potri.019G103800 ID=Potri.019G103800.1.v4.1 annot-version=v4.1 MGVEDSWDTVVSPPTTTLVPLNLERDDHWRHFDNSVNAVSFGFVATAILISMFLVMAIFERFLRPRSLSSSAGTNGSSSSSSNDLEAQVVFHGKLDFPSL KMTVYEKGVSVLMPGDDVPTFLAHPAPAPCRPERMIIQPLQQHSLCHSFTSTSTSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G11120			unknown protein		Potri.019G103800 [exp]	0	1
AT2G27490		ATCOAE	dephospho-CoA kinase family (....		Potri.008G053601 [exp]	4.00	0.8768
					Potri.001G194901 [exp]	6.48	0.8499
AT4G07950			DNA-directed RNA polymerase, s...		Potri.012G015900 [exp]	8.94	0.8438
					Potri.009G036201 [exp]	9.53	0.8448
					Potri.013G126650 [exp]	10.00	0.8499
AT5G45590			Ribosomal protein L35 (.1)		Potri.001G133600 [exp]	11.40	0.8042
AT1G14685	BBR_BPC	BBR/BPC2, ATBPC...	basic pentacysteine 2 (.1.2.3)		Potri.015G032900 [exp]	12.36	0.8419	Pt-GBP.7
AT4G27740			Yippee family putative zinc-bi...		Potri.015G009100 [exp]	13.85	0.8361
AT4G11980		ATNUDX14, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.003G118300 [exp]	14.83	0.8381
AT1G77160			Protein of unknown function (D...		Potri.002G071500 [exp]	16.73	0.8319

Compare expression of checked genes

Potri.019G103800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.