Plant FIBer expression Database

Potri.019G104400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G03530 243 / 5e-70 ATNAF1 nuclear assembly factor 1 (.1)
AT4G03380 47 / 1e-05 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G145300
[exp]
585 / 0 AT1G03530 280 / 2e-83 nuclear assembly factor 1 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022870
[exp]
252 / 4e-73 AT1G03530 274 / 3e-80 nuclear assembly factor 1 (.1)
Lus10024956
[exp]
246 / 8e-73 AT1G03530 266 / 1e-79 nuclear assembly factor 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0575 EFTPs PF04410 Gar1 Gar1/Naf1 RNA binding region
Representative CDS sequence
>Potri.019G104400.1 pacid=42773561 polypeptide=Potri.019G104400.1.p locus=Potri.019G104400 ID=Potri.019G104400.1.v4.1 annot-version=v4.1
ATGGTGGGGTTTGTATTTGAGCCCTCAACTACTGAAGAAGAGAACAACCAAATTTCAAAAGCTAGAAACTTTAAAGACCCAATTCAACCTTTTGATCAAA
AGCTCACAAATTTCGCTGATTATTTTCTTGATTTTGATTCCATAGAGGAGTTTTTTGGGGACCCAGAAAGGGTTAGTTTGGATTTTGAGAAGAGAATGGA
GGTGGAGGATAAACAGTTTGTTGTTAAGGATTTAACTGTTGATGGGTCTGATTTAGTTTTTGAAGAGAAGAAGGGAATTGTTGATGGGTCTGATTTGGAG
GGTTTAATGAAGGTGAAGGGAGAAAGAGTGGAGCTTGAAAGAGGAGGGAGTTTGGAGTGTTCTATTGAGGAAGAGATGGGAAGGGTTAGTTTGGTTGCCG
TGTCGAGTTTAGTTGTTGCTGATGGGGGTGGAAAAGTGGTGGGTGAAGAGGCAGAGATAGATAATGGTGGTTTGATAAATGTTTCGGGTTCGGATATTGG
TAATGGTAGTGGTGTGAATGGAAAAGTGGTGAATGATGAGGACGAGAGAGAAAGTGAAAGTAGTGAGTCTGAGTCAGAGAGTGAAAGTAGTGAGTCTTCT
AGTAGCAGTGATGATGATGGTGAAGAGGACAGTGAGGAAGAGAAGCAGGAGGAGAGGGAAGTTAGGGAGGTAGTAAATAAAGAGTTAGATGATTTGGGTG
ACATGGAAGAAGGTGAGATAAGGGATGTTAATGGAGAGGAAATGGTTGGTAGGGATGATACTGATGTTGAAGTGTTTGAGGAGGAGGATGGAGACAAGAT
GGTCGAGTGGAGTGATTTCGATGAAGATGAGGATGCTGTTAATGAAGGAGACCCTATTAGGTCGAAGAACGAACTCAAGTTTCTCCCTCCAGTTCCTCCA
GTGGTTGCTTCCTTGGAACCGCATCATCAGATGCAGGCTGTTGGAGCTGTTTTGTCGGCTATAGGTTCCCAGGTTATAGTAGAAGGGGTGGAAAAGCACA
ACCCTTTGAATGAGGGTTCTATCCTTTGGATAACTGAAAAGAGATCCCCATTGGGGTTGGTAGATGAGATTTTTGGACCTGTCAAGAACCCATACTATGT
GGTGAGATACAATTCAGAGAGTGAAGTCCCTGGAGGGATCCACAATGGTACTGTGATATCTTTTGTTCCTGAGTTTGCCAATCATGTGCTCAACGACAAG
AATCTTTACAAGAAAGGGTATGATGCATCTGGTGAATTCGATGAAGAGCTAACTAAGGAGGCAGAATTTTCAGATGACGATGAAGAGGCAGAGTACAAGA
GGATGTTAAAAATGTCCAAGAGGGGAATAGATTGTGAGATGGTTGGAAAAAAGAAAAACAACAGAAGGAAGGTGAAAAATAGGGGGGGTGGTTGGAAGAA
CAATAAACCTTCAGGGGAGCAAATACCTACTGGTGTAGATCAGCTATCACCCGATCAAAATTTGTTCAATGAATCTTCTGTTGGAACAGCATTTGCTCCA
GTGCCACAGACAACTGGTGTTTTTACTCCAAATGGTGGATGGGTGAATGAGGCACCTTCTCATCAGCCAGAGACTTTAGCAATTCCAGGTGGATTTCCAG
CTAATAATATGCCTTGGGCTGCACGGAGTCAACTTCAGCATCCCTATCAGATACCTAGGGCAATTGGTATGCCAATTCAGCAACAGTTCAATCCTTGTAA
GGGACCACTTCCTAATGCTTTCTTCCCAGGCGGACATCCAAATTTCTTTGCTGGACCTACATATCCTCCACCATGGCCTGCAGTTGGAGGGCAAAACTAC
TTTAACCAAGCTGCATTTGGAACAGGATTTCAGGTTCAACCTAATCCCCAAGCTATGAATACAATAGAACAAGGAATGATGTCCAGAGGACTGCCTTTAG
AACAGAACTGCAGTTTTCAATCACCAGCCATCCCTCCTGGAAACATAAAAGCTCCTCAGCAATTCAACACGGGAGCCTCTTCCAGCCATGGAAGGAAACC
TTATCGTAGAGGGGGTGGTTGTTTTTCAGGTGGAAGAGGCAGGCAGCCATCAAACTAA
AA sequence
>Potri.019G104400.1 pacid=42773561 polypeptide=Potri.019G104400.1.p locus=Potri.019G104400 ID=Potri.019G104400.1.v4.1 annot-version=v4.1
MVGFVFEPSTTEEENNQISKARNFKDPIQPFDQKLTNFADYFLDFDSIEEFFGDPERVSLDFEKRMEVEDKQFVVKDLTVDGSDLVFEEKKGIVDGSDLE
GLMKVKGERVELERGGSLECSIEEEMGRVSLVAVSSLVVADGGGKVVGEEAEIDNGGLINVSGSDIGNGSGVNGKVVNDEDERESESSESESESESSESS
SSSDDDGEEDSEEEKQEEREVREVVNKELDDLGDMEEGEIRDVNGEEMVGRDDTDVEVFEEEDGDKMVEWSDFDEDEDAVNEGDPIRSKNELKFLPPVPP
VVASLEPHHQMQAVGAVLSAIGSQVIVEGVEKHNPLNEGSILWITEKRSPLGLVDEIFGPVKNPYYVVRYNSESEVPGGIHNGTVISFVPEFANHVLNDK
NLYKKGYDASGEFDEELTKEAEFSDDDEEAEYKRMLKMSKRGIDCEMVGKKKNNRRKVKNRGGGWKNNKPSGEQIPTGVDQLSPDQNLFNESSVGTAFAP
VPQTTGVFTPNGGWVNEAPSHQPETLAIPGGFPANNMPWAARSQLQHPYQIPRAIGMPIQQQFNPCKGPLPNAFFPGGHPNFFAGPTYPPPWPAVGGQNY
FNQAAFGTGFQVQPNPQAMNTIEQGMMSRGLPLEQNCSFQSPAIPPGNIKAPQQFNTGASSSHGRKPYRRGGGCFSGGRGRQPSN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G03530 ATNAF1 nuclear assembly factor 1 (.1) Potri.019G104400
[exp]
0 1
AT1G48760 PAT4, DELTA-ADR PROTEIN-AFFECTED TRAFFICKING 4... Potri.015G045600
[exp]
6.08 0.7114
AT2G34400 Pentatricopeptide repeat (PPR-... Potri.003G041650
[exp]
13.49 0.5852
AT4G12780 Chaperone DnaJ-domain superfam... Potri.002G217200
[exp]
14.96 0.6531
AT5G66130 ATRAD17 RADIATION SENSITIVE 17 (.1) Potri.005G111000
[exp]
15.29 0.5788
AT1G48760 PAT4, DELTA-ADR PROTEIN-AFFECTED TRAFFICKING 4... Potri.012G055000
[exp]
21.77 0.6435
AT3G12620 Protein phosphatase 2C family ... Potri.008G046900
[exp]
21.90 0.5341
AT5G23450 ATLCBK1 long-chain base (LCB) kinase 1... Potri.010G255600
[exp]
22.91 0.6044
AT5G18610 Protein kinase superfamily pro... Potri.008G205700
[exp]
23.74 0.6360
AT2G44730 Trihelix Alcohol dehydrogenase transcri... Potri.003G083800
[exp]
27.16 0.6075
AT2G25430 epsin N-terminal homology (ENT... Potri.006G255000
[exp]
27.56 0.5931

Potri.019G104400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.