Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28190 359 / 5e-127 ULT ULT1 ULTRAPETALA1, Developmental regulator, ULTRAPETALA (.1.2) AT2G20825 330 / 8e-116 ULT ULT2 ULTRAPETALA 2, Developmental regulator, ULTRAPETALA (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G145400 [exp] 436 / 1e-157 AT4G28190 380 / 2e-135 ULTRAPETALA1, Developmental regulator, ULTRAPETALA (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039791 [exp] 391 / 2e-139 AT4G28190 359 / 8e-127 ULTRAPETALA1, Developmental regulator, ULTRAPETALA (.1.2) Lus10018560 [exp] 296 / 2e-101 AT4G28190 273 / 2e-92 ULTRAPETALA1, Developmental regulator, ULTRAPETALA (.1.2) Lus10038586 [exp] 206 / 4e-66 AT2G20825 205 / 5e-66 ULTRAPETALA 2, Developmental regulator, ULTRAPETALA (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.019G104500.1 pacid=42773088 polypeptide=Potri.019G104500.1.p locus=Potri.019G104500 ID=Potri.019G104500.1.v4.1 annot-version=v4.1 ATGGCTAATGGGGTTGAGAGAGAGCTGGTGGTGTTGTTTAGTGAAGAAGAGTTGAGAGAGATGAGTGGGGTCAAGAGAGGTGAAGAGTACATAGAAGTGA CGTGTGGGTGTACCAGCCATAGATATGGCGATGCTGTTGGTAGGCTTAGGGTTTTTATCAATGGTGAACTTGAAATCACATGTGAATGCACTCCTGGTTG CGATGAAGATACGATGACTCCTGCTGCATTTGAAAAGCACTCTGGAAGAGAGACAGCTAGAAAATGGAAGAACAATGTCTGGGTCATAGTTAATGGGGAG AAGGTTCCATTGTCAAAGACTGTGTTGCTCAAATACTACAATCAGGCCTCAAAAAATGGCAATGGATCCCACAGGTCAAATAATGGACGAGTTTGTCACC GTGATGAGTTTGTTCGCTGTAGTAAATGTAATAAGGAACGCAGGTTCCGATTACGGACCAAAGAGGAGTGTCAGATTCACCATGATGCTTTGGCTGATGC GAACTGGAAATGTGCTGATATGCCTTTTGACAAAATAACATGTGATGATGATGAAGAACGAGCAAGCCGAAGGGTATACAGAGGTTGCACCCGTTCTCCA ACATGCAAGGGCTGCACTTCCTGTGTGTGCTTTGGGTGTGAGATCTGTCGCTTCTCAGATTGCAGCTGCCAAACCTGCACTGACTTCACCAGGAATGCAA AAGTTTGA
AA sequence Show only first row Show all	>Potri.019G104500.1 pacid=42773088 polypeptide=Potri.019G104500.1.p locus=Potri.019G104500 ID=Potri.019G104500.1.v4.1 annot-version=v4.1 MANGVERELVVLFSEEELREMSGVKRGEEYIEVTCGCTSHRYGDAVGRLRVFINGELEITCECTPGCDEDTMTPAAFEKHSGRETARKWKNNVWVIVNGE KVPLSKTVLLKYYNQASKNGNGSHRSNNGRVCHRDEFVRCSKCNKERRFRLRTKEECQIHHDALADANWKCADMPFDKITCDDDEERASRRVYRGCTRSP TCKGCTSCVCFGCEICRFSDCSCQTCTDFTRNAKV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G28190	ULT	ULT1	ULTRAPETALA1, Developmental re...		Potri.019G104500 [exp]	0	1
AT1G01780	LIM	PLIM2b	PLIM2b, GATA type zinc finger ...		Potri.002G157300 [exp]	11.83	0.8351
AT4G22820			A20/AN1-like zinc finger famil...		Potri.012G130000 [exp]	28.61	0.8142
AT5G19780		TUA5	tubulin alpha-5 (.1)		Potri.003G220300 [exp]	36.82	0.7809	TUA2
AT2G38020		EMB258, MAN, VC...	VACUOLELESS 1, MANGLED, vacuol...		Potri.002G057800 [exp]	38.27	0.8309	Pt-VCL1.3
AT2G37060	CCAAT	NF-YB8	"nuclear factor Y, subunit B8"...		Potri.010G216600 [exp]	39.74	0.8221
AT3G07880		SCN1	SUPERCENTIPEDE1, Immunoglobuli...		Potri.002G234600 [exp]	60.37	0.8185
AT1G06920	OFP	ATOFP4, OFP4	ARABIDOPSIS THALIANA OVATE FAM...		Potri.013G155200 [exp]	73.04	0.7989
AT2G03120		ATSPP	signal peptide peptidase (.1)		Potri.001G276700 [exp]	79.09	0.8123
AT1G29240			Protein of unknown function (D...		Potri.004G057800 [exp]	88.48	0.8075
AT4G35550	HD	HB-4, WOX13, AT...	WUSCHEL related homeobox 13 (....		Potri.005G252800 [exp]	94.39	0.7860

Compare expression of checked genes

Potri.019G104500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.