Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20830 289 / 4e-97 transferases;folic acid binding (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G145600 [exp] 554 / 0 AT2G20830 295 / 2e-99 transferases;folic acid binding (.1.2.3) Potri.013G145700 [exp] 336 / 8e-116 AT2G20830 384 / 7e-135 transferases;folic acid binding (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018559 [exp] 447 / 3e-159 AT2G20830 288 / 6e-97 transferases;folic acid binding (.1.2.3) Lus10039790 [exp] 440 / 2e-156 AT2G20830 285 / 6e-96 transferases;folic acid binding (.1.2.3) Lus10039789 [exp] 315 / 2e-107 AT2G20830 344 / 2e-119 transferases;folic acid binding (.1.2.3) Lus10018558 [exp] 295 / 1e-99 AT2G20830 354 / 3e-123 transferases;folic acid binding (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07837 [poplar] [flax] FTCD_N Formiminotransferase domain, N-terminal subdomain
Representative CDS sequence Show only first row Show all	>Potri.019G104700.1 pacid=42774026 polypeptide=Potri.019G104700.1.p locus=Potri.019G104700 ID=Potri.019G104700.1.v4.1 annot-version=v4.1 ATGGATTCTGACTCAAGTTGCGAGAACAAAAGAACTGCAAATGAATCCATGCTGGTAAGTTGCATGCTCTACATCTCTGAGGCACGTAACCGCGCAGTTC TGGACTTGATTGAACGAGCTGCTAGGCTCGACCCAGAAAGTGTTATTGTAAACAAATTTGAGGACCGAGTTTATAATAGGATCAGGTTCACTATTGTATC ATATGTTGTTGTTGATAGCACTGGGAGTCCCATTTATAGTCCATTGCACCAAACTGTGCTAGCCATGGTTGAGGCTGCTTATGGAGCCATTAACCTTGAG TTGCACTCCGGTGCACACCCTCGGCTTGGTGTTGTAGATGACATTGTTTTCCACCCTTTGGCTCGGGCCTCGCTGGATGAAGCAGCCTGGCTGGCCAAGA CAGTGGCAGCAGATATGGGCAGCAGATTTCAAGTGCCAGTATTTCTTTATGCTGCAGCACATCCAACAGGCAGGGCTCCTGACACCATCAGGCGCGAGCT GGGGTACTATACGCCTAATTTCATGGGCAACCAATGGGCTGGGTGGACCATACCTGAGATTCTCCCTGGAGCCCCTGATGAAGGTCCGACCCATGTGTCG CGAACAAGAGGAATAGTGATGATTGGGGCTCGACCATGGGTCGCATTATACAACATTCCTGTAGTGTGCACCGATGTTTCAACTGCTCGACAGATTGCAC GGATGGTGAGGGCTCGTGATGGCGGGCTTCCTACCGTGCAAGCATTGGCGCTCGTTCACGGTGATGATTCATTTGAGATCGCTTGTATCCTCTTAGAGCC CAATCAGGTTGGAGCTGAAAGGGTCCAGGCAGAGGTTGAGATGCTGGCAGCCCAAGAAGGATTGGAAGTAGAGAAGGGCTACTTCACAGATTTTCCACCA GAAATGATTGTTGAGAAGTACATGAATTTAATCTCTTCTAGGAGAGACTGA
AA sequence Show only first row Show all	>Potri.019G104700.1 pacid=42774026 polypeptide=Potri.019G104700.1.p locus=Potri.019G104700 ID=Potri.019G104700.1.v4.1 annot-version=v4.1 MDSDSSCENKRTANESMLVSCMLYISEARNRAVLDLIERAARLDPESVIVNKFEDRVYNRIRFTIVSYVVVDSTGSPIYSPLHQTVLAMVEAAYGAINLE LHSGAHPRLGVVDDIVFHPLARASLDEAAWLAKTVAADMGSRFQVPVFLYAAAHPTGRAPDTIRRELGYYTPNFMGNQWAGWTIPEILPGAPDEGPTHVS RTRGIVMIGARPWVALYNIPVVCTDVSTARQIARMVRARDGGLPTVQALALVHGDDSFEIACILLEPNQVGAERVQAEVEMLAAQEGLEVEKGYFTDFPP EMIVEKYMNLISSRRD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G20830			transferases;folic acid bindin...		Potri.019G104700 [exp]	0	1
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Potri.001G175700 [exp]	1.73	0.8716	PtrPDR12
AT4G33000		SCABP8, ATCBL10...	SOS3-LIKE CALCIUM BINDING PROT...		Potri.003G037800 [exp]	4.89	0.8277
AT1G75710	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.002G023200 [exp]	5.47	0.7994
AT4G21620			glycine-rich protein (.1.2)		Potri.011G045000 [exp]	8.12	0.7862
AT1G60010			unknown protein		Potri.008G146500 [exp]	16.24	0.8076
AT4G27290			S-locus lectin protein kinase ...		Potri.011G128700 [exp]	26.72	0.7719
AT1G27370	SBP	SPL10	squamosa promoter binding prot...		Potri.014G057800 [exp]	29.08	0.7891
AT5G24320			Transducin/WD40 repeat-like su...		Potri.007G110500 [exp]	29.52	0.7947
AT3G22470			Pentatricopeptide repeat (PPR)...		Potri.013G034400 [exp]	32.40	0.7947
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.005G006701 [exp]	34.98	0.7654

Compare expression of checked genes

Potri.019G104700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.