Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03500 100 / 3e-22 Ankyrin repeat family protein (.1) AT1G03670 89 / 8e-19 ankyrin repeat family protein (.1) AT4G03460 88 / 2e-18 Ankyrin repeat family protein (.1) AT4G03490 88 / 3e-18 Ankyrin repeat family protein (.1.2) AT4G03450 81 / 6e-16 Ankyrin repeat family protein (.1) AT2G31820 78 / 3e-15 Ankyrin repeat family protein (.1) AT1G05640 78 / 4e-15 Ankyrin repeat family protein (.1) AT4G03480 77 / 6e-15 Ankyrin repeat family protein (.1) AT5G02620 76 / 1e-14 ATANK1, ANK1 ankyrin-like1 (.1) AT4G14390 76 / 2e-14 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G107000 [exp] 694 / 0 AT4G03500 140 / 5e-35 Ankyrin repeat family protein (.1) Potri.019G108000 [exp] 397 / 3e-133 AT4G03500 126 / 3e-30 Ankyrin repeat family protein (.1) Potri.019G107700 [exp] 393 / 6e-132 AT4G03500 129 / 2e-31 Ankyrin repeat family protein (.1) Potri.019G106000 [exp] 383 / 7e-128 AT4G03460 109 / 8e-25 Ankyrin repeat family protein (.1) Potri.019G107800 [exp] 370 / 6e-123 AT4G03500 129 / 2e-31 Ankyrin repeat family protein (.1) Potri.019G108200 [exp] 369 / 2e-122 AT4G03500 114 / 2e-26 Ankyrin repeat family protein (.1) Potri.019G105900 [exp] 368 / 3e-122 AT4G03500 129 / 2e-31 Ankyrin repeat family protein (.1) Potri.019G108801 [exp] 275 / 2e-88 AT4G03500 101 / 4e-23 Ankyrin repeat family protein (.1) Potri.019G109150 [exp] 207 / 3e-61 AT4G03500 83 / 1e-16 Ankyrin repeat family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020209 [exp] 140 / 1e-35 AT1G03670 175 / 6e-47 ankyrin repeat family protein (.1) Lus10013878 [exp] 117 / 3e-29 AT1G03670 112 / 4e-27 ankyrin repeat family protein (.1) Lus10026833 [exp] 92 / 7e-20 AT4G03500 107 / 4e-04 Ankyrin repeat family protein (.1) Lus10015224 [exp] 75 / 3e-14 AT1G07710 727 / 0.0 Ankyrin repeat family protein (.1) Lus10008329 [exp] 74 / 8e-14 AT2G31820 854 / 0.0 Ankyrin repeat family protein (.1) Lus10005432 [exp] 74 / 8e-14 AT1G07710 720 / 0.0 Ankyrin repeat family protein (.1) Lus10027074 [exp] 71 / 7e-13 AT2G31820 626 / 0.0 Ankyrin repeat family protein (.1) Lus10015037 [exp] 68 / 5e-12 AT3G09550 849 / 0.0 Ankyrin repeat family protein (.1) Lus10003308 [exp] 67 / 2e-11 AT3G12360 981 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Lus10003986 [exp] 67 / 2e-11 AT3G09550 831 / 0.0 Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [poplar] [flax] Ank PF12796 [poplar] [flax] Ank_2 Ankyrin repeats (3 copies) CL0465 [poplar] [flax] Ank PF13637 [poplar] [flax] Ank_4 Ankyrin repeats (many copies) CL0465 [poplar] [flax] PF13962 [poplar] [flax] PGG Domain of unknown function
Representative CDS sequence Show only first row Show all	>Potri.019G106300.4 pacid=42773532 polypeptide=Potri.019G106300.4.p locus=Potri.019G106300 ID=Potri.019G106300.4.v4.1 annot-version=v4.1 ATGTTGAGGATGACCAATGAAGAGAAAGATACAGCGTTGCATGTGGCAGCTCGAAATATCCAAGTCCAAGTGGTGGAAATATTGACTAAAGAGGACCCTG AGTTTTCATATTCCACCAATGTTCATGGAGAAACTCCACTTTATATTGCTGCCAATTTGAGGTTTAATTGGAGGTTTAAAAGACATGAAGAAAATAGAAA AAAAGTGATCAACGAAATCTTGAGTAATTGCAAGTCAGTGGAATATTGTGGTTCTCATGGCAGAACCGCACTACACGCGGCAGGCATGTATGGTGATCAT GAGACAGCAAGAAAGATATTAGAAAGAGACGCGAGTTTGACGAGAAGAACCGACGATGACGGGTGGTCACCACTTCACTACGCTGTCTTTTTCCGTGATT TTGTTCATAGTGTGTCAACAGTAGAAGTACTACTAGAACATGATGTGTCCGCAGCCTACATTGTTGATTCAGAGAAGAGAACAGCCCTTCACTTGGCCGC CTCTCGAGGCACTTGGGCAGCAGCGATAGCGATTATGAACACTTGTCCAGCTAGTTGTGAACTAGTGGATAGCAGAGGTTGGAATGCCCTTCACTATGCT GCCATAACTCGAAAAGGACATATCCGTTTCTCTCGATGGATTCCTAAATTTGACAAACTTATATACGAGAAGGATAACGATGGAAACACGCCATTGCATC TATTTGCTGCTTTCGGCAATTTTCCCCAGATGTTTTTGAGGAGTGATTGGAGACATGCGTACAAGAAGATGTGTGGCCTTAACAAGCAAAACCTCAGCGT TGATGACATCTTGAGAGGACATTTTCCCCAAAAAAAGAAAGAGTTTTTGGAATCATTGAAAGATGTACATAGTGGACCGCTTCAACGGCCCATAGGTATG ATTAAAACAGAGGACCTCTCTATTTCTATTTCTGAGAGTGGAATGGAGACTCGTGTGCTTGTAGCGGCACTCGTAGCAACAGTAACATTTGCAGCTGCTT TCACCGTCCCTGGCGGTTACAAGAACGAACAAGGCACTCCAGTTCTTGTTAAAAATGCTGCTTTTGCAGTCTTTGTTATATCAGATGCAACAGCAATGGT TCTCTCAACTTCTGCTCTCTTCCTGCACTTTTATTGGGCACTGCTTGGAAAAAGAGGTCAAGTGGATGAGGACATAATAGAAAACTTCTCTCATTGGACA GCTGTTTTAACCGCATATGCCATCCTAGCAATGATCATCGTATTCATCACAGGAAGTTATGCAGTGCTAGCTCCATCATCATGGCTTGCAATCACGACTT GTTTCATTGGTGTAGCCTTCATCTTCCTTGCAACCGCATATGCATTCATAGTTGACGCACTCACCTTTATAAAATATTGGAAATAA
AA sequence Show only first row Show all	>Potri.019G106300.4 pacid=42773532 polypeptide=Potri.019G106300.4.p locus=Potri.019G106300 ID=Potri.019G106300.4.v4.1 annot-version=v4.1 MLRMTNEEKDTALHVAARNIQVQVVEILTKEDPEFSYSTNVHGETPLYIAANLRFNWRFKRHEENRKKVINEILSNCKSVEYCGSHGRTALHAAGMYGDH ETARKILERDASLTRRTDDDGWSPLHYAVFFRDFVHSVSTVEVLLEHDVSAAYIVDSEKRTALHLAASRGTWAAAIAIMNTCPASCELVDSRGWNALHYA AITRKGHIRFSRWIPKFDKLIYEKDNDGNTPLHLFAAFGNFPQMFLRSDWRHAYKKMCGLNKQNLSVDDILRGHFPQKKKEFLESLKDVHSGPLQRPIGM IKTEDLSISISESGMETRVLVAALVATVTFAAAFTVPGGYKNEQGTPVLVKNAAFAVFVISDATAMVLSTSALFLHFYWALLGKRGQVDEDIIENFSHWT AVLTAYAILAMIIVFITGSYAVLAPSSWLAITTCFIGVAFIFLATAYAFIVDALTFIKYWK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G03500			Ankyrin repeat family protein ...		Potri.019G106300 [exp]	0	1
AT4G03500			Ankyrin repeat family protein ...		Potri.019G107000 [exp]	4.47	0.9301
AT2G26975			Ctr copper transporter family ...		Potri.009G038700 [exp]	9.69	0.8639	Pt-COPT2.1
AT5G45540			Protein of unknown function (D...		Potri.012G018400 [exp]	10.72	0.9300
AT1G54400			HSP20-like chaperones superfam...		Potri.013G054800 [exp]	17.49	0.9242
AT1G03670			ankyrin repeat family protein ...		Potri.013G133900 [exp]	17.60	0.9142
AT5G45540			Protein of unknown function (D...		Potri.006G013750 [exp]	18.33	0.9126
AT1G60500		DRP4C	Dynamin related protein 4C (.1...		Potri.013G119900 [exp]	19.26	0.9179
AT2G27140			HSP20-like chaperones superfam...		Potri.009G153200 [exp]	20.00	0.9174
AT4G35000		APX3	ascorbate peroxidase 3 (.1)		Potri.005G112200 [exp]	20.56	0.9170
AT4G12690			Plant protein of unknown funct...		Potri.015G084500 [exp]	20.78	0.8633

Compare expression of checked genes

Potri.019G106300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.