Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03500 140 / 5e-35 Ankyrin repeat family protein (.1) AT4G03460 126 / 2e-30 Ankyrin repeat family protein (.1) AT4G03450 120 / 2e-28 Ankyrin repeat family protein (.1) AT1G03670 106 / 7e-24 ankyrin repeat family protein (.1) AT4G03480 104 / 2e-23 Ankyrin repeat family protein (.1) AT2G31820 99 / 2e-21 Ankyrin repeat family protein (.1) AT1G05640 97 / 7e-21 Ankyrin repeat family protein (.1) AT4G14390 95 / 3e-20 Ankyrin repeat family protein (.1) AT4G03470 90 / 1e-18 Ankyrin repeat family protein (.1) AT4G03490 88 / 7e-18 Ankyrin repeat family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G106300 [exp] 649 / 0 AT4G03500 100 / 2e-22 Ankyrin repeat family protein (.1) Potri.019G108000 [exp] 533 / 0 AT4G03500 126 / 3e-30 Ankyrin repeat family protein (.1) Potri.019G106000 [exp] 529 / 0 AT4G03460 109 / 8e-25 Ankyrin repeat family protein (.1) Potri.019G107700 [exp] 527 / 0 AT4G03500 129 / 2e-31 Ankyrin repeat family protein (.1) Potri.019G108200 [exp] 523 / 2e-180 AT4G03500 114 / 2e-26 Ankyrin repeat family protein (.1) Potri.019G107800 [exp] 513 / 4e-177 AT4G03500 129 / 2e-31 Ankyrin repeat family protein (.1) Potri.019G105900 [exp] 512 / 2e-176 AT4G03500 129 / 2e-31 Ankyrin repeat family protein (.1) Potri.019G108801 [exp] 434 / 2e-148 AT4G03500 101 / 4e-23 Ankyrin repeat family protein (.1) Potri.019G109150 [exp] 369 / 1e-121 AT4G03500 83 / 1e-16 Ankyrin repeat family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020209 [exp] 174 / 1e-46 AT1G03670 175 / 6e-47 ankyrin repeat family protein (.1) Lus10013878 [exp] 112 / 6e-27 AT1G03670 112 / 4e-27 ankyrin repeat family protein (.1) Lus10026833 [exp] 100 / 7e-22 AT4G03500 107 / 4e-04 Ankyrin repeat family protein (.1) Lus10008329 [exp] 99 / 2e-21 AT2G31820 854 / 0.0 Ankyrin repeat family protein (.1) Lus10013877 [exp] 82 / 1e-18 ND / Lus10003986 [exp] 81 / 1e-15 AT3G09550 831 / 0.0 Ankyrin repeat family protein (.1) Lus10015037 [exp] 80 / 2e-15 AT3G09550 849 / 0.0 Ankyrin repeat family protein (.1) Lus10038609 [exp] 73 / 7e-14 AT1G10340 142 / 2e-38 Ankyrin repeat family protein (.1.2) Lus10003308 [exp] 74 / 1e-13 AT3G12360 981 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Lus10015224 [exp] 71 / 1e-12 AT1G07710 727 / 0.0 Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [poplar] [flax] Ank PF13637 [poplar] [flax] Ank_4 Ankyrin repeats (many copies) CL0465 [poplar] [flax] PF13962 [poplar] [flax] PGG Domain of unknown function
Representative CDS sequence Show only first row Show all	>Potri.019G107000.1 pacid=42774706 polypeptide=Potri.019G107000.1.p locus=Potri.019G107000 ID=Potri.019G107000.1.v4.1 annot-version=v4.1 ATGAATTCCTCTGATCAACAAATGAATAGCATCACTTACATGGAACCAAAATTGTACAAAGCTGCAGAAGCAGGCAACATCAACCCATTTAAGGATCGTC TTCCAACTTCTCTCAATGAGCTATTGACTCCAAAAAAAAACACAATTCTTCATGTTTACTTAGAAAACCAACGTAAAGGATCGAAATCCACTGATTTTGT TGGCCAAATTATTGATATGTGTCCACCACTATTATTGCAGGCCAATAAGAAAGGTGAAATCCCACTCCATTTTGCGGCAAGATATGGGCGTTCCAACGTG GTAAGAGTCCTCATTGACCGCGCAAAAGCTCGACCTACTGATCCAGAGAGCGGAGTAACAGAAGCAAAAAAGATGTTGAGGACGGCCAATGAAGAGCAAG ATACAGCGTTGCATGTGGCAGCTCGAAATATCCAAGCCCAAGTGGTGGAAATATTGACTAAAGAGGACCCTGAGTTTTCATATTCCGCCAATGTTCATGG AGAAACTCCACTTTATATTGCTGCCAATATGAGGTTTAATTGGAGGTTTAAAAGACATGAAGAAAATAGAAAAAAAGTGATCGACGAAATCTTGAGTAAT TGCAAGTCAGTGGAATATAGTGGTTCTCATGGCAGAACCGCACTACACGCGGCAGCCATGCATGGTGATCATGAGACAGCTAGAAAGATATTGAAAAGAA ACCCGAGTTTGACGAGAAGAACCGACGATGACGGGTGGTCCCCACTTCACTACGCTGCCTTTTTCCCTTATTTATCTCATGGTGTGCCTACAGTAAAAGT ACTACTAGAACATGATGTGTCCGCAGCCTACATTGTCGATTCAGAGAAGAGAACAGCCCTTCACTTGGCCGTCGTTCGAGGCGATGTGGCAGCAGTGAGA GCGATTATGAACCCTTGTCCAGCTTGTTGTGAACTAGTGGATAACAGAGGTTGGAATGTCCTTCACTACGCTGCCACAACTATAAAAGGATATTTCTATT TCCCTCAATGGATTCCTCACTTTGAGAAACTTAAATACGAGAAGGATAACGATGGAAACACACCATTGCATCTATATGCTGCTTTAGGCAATTTTCCCCA GCAGAGATTGAGTAGTGATTGGATACATGCGTACAAGAAGATGTGTGGCCTTAACAAGCGAAACCTCAGCGTTGATGACATCTTGGGACGAAATTTTCCT GAAACAAAGAAAGAGATTTTGGAATCATTGAAAGATGTACGGAGTGGACCTCTTCAACGGCCCATAGCTATGATGAAAAAAGAGTACCTCTCTATTTCTG AGAGAGGAATGGAGACTCGTGTACTTGTAGCGGCACTCGTAGCAACAGTTACATTTGCAGCTGCTTTCACCATGCCTGGCGGTTACAAAAACGAACAAGG CATTGCAGTTCTTCTTAAAAATGCTGCTTTTGTAGTCTTCGTTATATCAGATGCAATAGCAATGCTTCTCTCAATTTCTGCTCTCTTCATGCACTTTTGT TGGGCACCGATTGGAACAAGAGGTCAAGTGGAAGAGGATATGAAAGGAAATTGGACATCTACTTTAACCATATGTGCCATCCCAGCAATGGTCATCGCAT TCATCACAGGAAGTTATGCAGTGCTAGCTCCATCATCATGGCTTGCAATCACGACTTGTTTCATTGGTGCAGCCTTCATCTTCTTTGCGTCCACGGCATT CATAGTTGACGGACGCACCCTTTTTAAAATATTAAAAATACAAAGATTGAAATTTGACAGTACGTTGTTGACTGTTGAGAGCTTTGTTGACAAAAAAAAT TGA
AA sequence Show only first row Show all	>Potri.019G107000.1 pacid=42774706 polypeptide=Potri.019G107000.1.p locus=Potri.019G107000 ID=Potri.019G107000.1.v4.1 annot-version=v4.1 MNSSDQQMNSITYMEPKLYKAAEAGNINPFKDRLPTSLNELLTPKKNTILHVYLENQRKGSKSTDFVGQIIDMCPPLLLQANKKGEIPLHFAARYGRSNV VRVLIDRAKARPTDPESGVTEAKKMLRTANEEQDTALHVAARNIQAQVVEILTKEDPEFSYSANVHGETPLYIAANMRFNWRFKRHEENRKKVIDEILSN CKSVEYSGSHGRTALHAAAMHGDHETARKILKRNPSLTRRTDDDGWSPLHYAAFFPYLSHGVPTVKVLLEHDVSAAYIVDSEKRTALHLAVVRGDVAAVR AIMNPCPACCELVDNRGWNVLHYAATTIKGYFYFPQWIPHFEKLKYEKDNDGNTPLHLYAALGNFPQQRLSSDWIHAYKKMCGLNKRNLSVDDILGRNFP ETKKEILESLKDVRSGPLQRPIAMMKKEYLSISERGMETRVLVAALVATVTFAAAFTMPGGYKNEQGIAVLLKNAAFVVFVISDAIAMLLSISALFMHFC WAPIGTRGQVEEDMKGNWTSTLTICAIPAMVIAFITGSYAVLAPSSWLAITTCFIGAAFIFFASTAFIVDGRTLFKILKIQRLKFDSTLLTVESFVDKKN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G03500			Ankyrin repeat family protein ...		Potri.019G107000 [exp]	0	1
AT4G03500			Ankyrin repeat family protein ...		Potri.019G106300 [exp]	4.47	0.9301
AT1G03670			ankyrin repeat family protein ...		Potri.013G133900 [exp]	6.24	0.9326
AT2G27140			HSP20-like chaperones superfam...		Potri.009G153200 [exp]	6.63	0.9391
AT3G50150			Plant protein of unknown funct...		Potri.016G039500 [exp]	8.48	0.9186
AT5G45480			Protein of unknown function (D...		Potri.016G012400 [exp]	10.39	0.9316
AT5G45540			Protein of unknown function (D...		Potri.012G018400 [exp]	12.24	0.9296
AT5G45540			Protein of unknown function (D...		Potri.015G107500 [exp]	14.86	0.9118
AT3G17380			TRAF-like family protein (.1)		Potri.003G103200 [exp]	15.87	0.9296
AT5G35735			Auxin-responsive family protei...		Potri.004G006700 [exp]	16.15	0.8914
AT1G54400			HSP20-like chaperones superfam...		Potri.013G054800 [exp]	18.76	0.9271

Compare expression of checked genes

Potri.019G107000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.