Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03500 129 / 2e-31 Ankyrin repeat family protein (.1) AT1G03670 119 / 2e-28 ankyrin repeat family protein (.1) AT4G03460 110 / 3e-25 Ankyrin repeat family protein (.1) AT4G03490 102 / 1e-22 Ankyrin repeat family protein (.1.2) AT4G03480 102 / 2e-22 Ankyrin repeat family protein (.1) AT1G07710 96 / 1e-20 Ankyrin repeat family protein (.1) AT4G03450 96 / 1e-20 Ankyrin repeat family protein (.1) AT2G31820 94 / 8e-20 Ankyrin repeat family protein (.1) AT4G03470 87 / 2e-17 Ankyrin repeat family protein (.1) AT4G14390 86 / 2e-17 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G105900 [exp] 1050 / 0 AT4G03500 129 / 2e-31 Ankyrin repeat family protein (.1) Potri.019G107700 [exp] 846 / 0 AT4G03500 129 / 2e-31 Ankyrin repeat family protein (.1) Potri.019G108200 [exp] 774 / 0 AT4G03500 114 / 2e-26 Ankyrin repeat family protein (.1) Potri.019G106000 [exp] 761 / 0 AT4G03460 109 / 8e-25 Ankyrin repeat family protein (.1) Potri.019G108000 [exp] 746 / 0 AT4G03500 126 / 3e-30 Ankyrin repeat family protein (.1) Potri.019G108801 [exp] 598 / 0 AT4G03500 101 / 4e-23 Ankyrin repeat family protein (.1) Potri.019G107000 [exp] 509 / 1e-175 AT4G03500 140 / 5e-35 Ankyrin repeat family protein (.1) Potri.019G109150 [exp] 442 / 9e-151 AT4G03500 83 / 1e-16 Ankyrin repeat family protein (.1) Potri.019G108501 [exp] 426 / 1e-147 AT4G03500 87 / 4e-19 Ankyrin repeat family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020209 [exp] 163 / 8e-43 AT1G03670 175 / 6e-47 ankyrin repeat family protein (.1) Lus10013878 [exp] 110 / 4e-26 AT1G03670 112 / 4e-27 ankyrin repeat family protein (.1) Lus10026833 [exp] 97 / 3e-21 AT4G03500 107 / 4e-04 Ankyrin repeat family protein (.1) Lus10005432 [exp] 96 / 2e-20 AT1G07710 720 / 0.0 Ankyrin repeat family protein (.1) Lus10015224 [exp] 95 / 2e-20 AT1G07710 727 / 0.0 Ankyrin repeat family protein (.1) Lus10038609 [exp] 87 / 2e-18 AT1G10340 142 / 2e-38 Ankyrin repeat family protein (.1.2) Lus10008329 [exp] 83 / 2e-16 AT2G31820 854 / 0.0 Ankyrin repeat family protein (.1) Lus10013877 [exp] 69 / 5e-14 ND / Lus10037894 [exp] 72 / 5e-13 AT1G10340 298 / 3e-93 Ankyrin repeat family protein (.1.2) Lus10024440 [exp] 69 / 5e-12 AT1G07710 618 / 0.0 Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [poplar] [flax] Ank PF12796 [poplar] [flax] Ank_2 Ankyrin repeats (3 copies) CL0465 [poplar] [flax] PF13962 [poplar] [flax] PGG Domain of unknown function
Representative CDS sequence Show only first row Show all	>Potri.019G107800.1 pacid=42774560 polypeptide=Potri.019G107800.1.p locus=Potri.019G107800 ID=Potri.019G107800.1.v4.1 annot-version=v4.1 ATGGATCCTGTCTTGTTCAAAGCGGCGGAAGCAGGCAATATCGGTCCCTTTGAGAATTATCAAACCAGCCTCAATCAGTTATTGACTGCAGACGAGAACA CCATTCTTCATGTCTACTTGAAAAACCAAAGCAGTGAACCGGAATCCACTGATTTTGTTGATAAATTTCTTGAAAGATGTCCACCACTGTTATTCCAAGC CAATAAGAGAGGAGAAACCCCCCTTCATTTGGCAGCAAGAAATGGCCATTCCAATGTGGTAAAAGTCCTCATTGACCGTGCAAAAGCTCTACCTGCGGAT CCGGAGAGCGGAGTAACTAAAGCTAAAATGATGTTGAGGATGACCAATGAAGAGCAAGATACAGCGTTGCACGAGGCAGCTCGAAATAGGCGGAGCCATG TGGTGGAAATATTGACTAAAGAGGACCCTGAGTTTTCATATCCCGCCAATGTTCATGGAGAAACTCCACTTTATATTGCTGCTTCCATTGGCTTTCTAAT GTTTAGCGAAGAACACGGAAAGGTAGTCGATGGAATCTTAGGAAATTGCATTTCAGTGGACTATGGCGGCCCTGATGGTAGAACTGCTCTACACGCGGCA AGCATGGCGGCAAATTATGAGACAGCAAGAAAAATGTTAGAAAAAGAAAAAAAGTTGACGAAAACAACCGATGAGAACGGCTGGTCACCACTTCACTACG CTTCCTATTGTGACTGGTCTAATGCTCCTATAGTGGAAGTATTACTAGAATATGATGCGTCCGCGGCCTCCATTGCTGAAACAGAGAAGAAGAGAACAGC ACTTCACATTGCTGCCATTCAAGGACATGTAGACGCAATGAAAGAGATTGTTTCTCGATGTCCAGCTTGTTGTGATCTAGTTGATAACAGAGGTTGGAAT GCCCTTCACTATGCTGTGGCAAGTAAAGATACAAAAGTATTCAAGGAATGTCTGAAGATTCCTGAACTTGCGAGACTTCAAACTGAGAAGGATGACAAAG GAAACACGCCCTTCCATCTAATTGCTGCTTTAGCGCACGAGCAGCCGGAATGGAGATATGTTTTATTTAACGATAGTAATGGTTATCGTAAATGGCAGAT ATATGGTCTTAATAAGCGAAAGCTAAGCGTCAACGACATTTATGAAGAAGATTTTGGAGAGATACAGAAAGAGATCCTAGAATCTCTTAACGATGGTGGC AGTGGACCGCTTGGCCGCCGGCGTAAGGTTTTGAGAAGAGGAAGAAACAAAGAGGGAGAGGATGCTTTGAGTAAAGCAAGAGAGTCTCATCTAGTAGTTG CGGCGCTGATAGCAACGGTAACATTTGCAGCAGCATTCACCCTACCTGGCGGTTACAAGAGCGACCGAGGCACTGCGATTCTAGCTAAAAAAGCTGCTTT TATAGTATTTGTCGTCTCAGATGCAATGTCAATGGTGCTCTCTATTTCTGCTGTCTTTATCCACTTTTTGATTTCGTTGATTCATGCTTTTGAAATGGAA AAGAGTAAAGATATAAGTGAGGAAGCCGCTATAAAACTATTTGGGGTTGCCACGTTGTTTACCATGATTGGCATGGGTATAATGATTATCGCATTCATTA CGGGCACATACGCCGTTTTAGAACCTTCCTTGGGGCTTGCCATCAGCAGTTGTCTCATTGGCCTGAGCTTCTTCTTCATTGTGTATTTAGTGTTTAGGAT CATTTTCAAGGATGTAGAAGATTAG
AA sequence Show only first row Show all	>Potri.019G107800.1 pacid=42774560 polypeptide=Potri.019G107800.1.p locus=Potri.019G107800 ID=Potri.019G107800.1.v4.1 annot-version=v4.1 MDPVLFKAAEAGNIGPFENYQTSLNQLLTADENTILHVYLKNQSSEPESTDFVDKFLERCPPLLFQANKRGETPLHLAARNGHSNVVKVLIDRAKALPAD PESGVTKAKMMLRMTNEEQDTALHEAARNRRSHVVEILTKEDPEFSYPANVHGETPLYIAASIGFLMFSEEHGKVVDGILGNCISVDYGGPDGRTALHAA SMAANYETARKMLEKEKKLTKTTDENGWSPLHYASYCDWSNAPIVEVLLEYDASAASIAETEKKRTALHIAAIQGHVDAMKEIVSRCPACCDLVDNRGWN ALHYAVASKDTKVFKECLKIPELARLQTEKDDKGNTPFHLIAALAHEQPEWRYVLFNDSNGYRKWQIYGLNKRKLSVNDIYEEDFGEIQKEILESLNDGG SGPLGRRRKVLRRGRNKEGEDALSKARESHLVVAALIATVTFAAAFTLPGGYKSDRGTAILAKKAAFIVFVVSDAMSMVLSISAVFIHFLISLIHAFEME KSKDISEEAAIKLFGVATLFTMIGMGIMIIAFITGTYAVLEPSLGLAISSCLIGLSFFFIVYLVFRIIFKDVED

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G03500			Ankyrin repeat family protein ...		Potri.019G107800 [exp]	0	1
AT4G03500			Ankyrin repeat family protein ...		Potri.019G105900 [exp]	1.00	0.9717
AT4G03500			Ankyrin repeat family protein ...		Potri.019G107700 [exp]	1.41	0.9180
AT1G29750		RKF1	receptor-like kinase in flower...		Potri.004G063200 [exp]	21.16	0.7928
AT3G57070			Glutaredoxin family protein (....		Potri.016G038600 [exp]	24.85	0.8440
AT3G60810			unknown protein		Potri.002G148400 [exp]	25.69	0.7843
AT1G03475		LIN2, HEMF1, AT...	LESION INITIATION 2, Coproporp...		Potri.011G023900 [exp]	30.33	0.8244
AT2G23200			Protein kinase superfamily pro...		Potri.005G143200 [exp]	30.39	0.8212
					Potri.019G071125 [exp]	34.49	0.7568
AT2G02070	C2H2ZnF	ATIDD5	indeterminate(ID)-domain 5 (.1...		Potri.008G142400 [exp]	41.83	0.8138
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Potri.018G104700 [exp]	47.69	0.7484

Compare expression of checked genes

Potri.019G107800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.