Plant FIBer expression Database

Potri.019G108050 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.019G108050.1 pacid=42774120 polypeptide=Potri.019G108050.1.p locus=Potri.019G108050 ID=Potri.019G108050.1.v4.1 annot-version=v4.1
ATGGGGGGGGGGGGGGCGGGGGCGCAGGAAACCATAGACACTGGAACAACACAGGGGAAGCACTGGCGAGAGGACGAACTGAGAGGGGGGAACAACACAG
GGGGAGCATACAACAGGGACGAACAGAGGAAACCAGGGGAGAAGAAGGAAGACCGAGGGAGCGAAGGTAATACAGACAGACCAGAGGAGAAAATCACAGA
CCAGAGGAGAAAATCACAAGGAACGAACAGACAGAAAGACGAAGAAGAAGAGGCACAGAACAGAAGGCGAGAGAACAGGACGAACAACACAAGAATACCA
GGAGACAAATACAGAGAAAGAACAGGCGACCCAAGAAAGTGA
AA sequence
>Potri.019G108050.1 pacid=42774120 polypeptide=Potri.019G108050.1.p locus=Potri.019G108050 ID=Potri.019G108050.1.v4.1 annot-version=v4.1
MGGGGAGAQETIDTGTTQGKHWREDELRGGNNTGGAYNRDEQRKPGEKKEDRGSEGNTDRPEEKITDQRRKSQGTNRQKDEEEEAQNRRRENRTNNTRIP
GDKYRERTGDPRK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.019G108050
[exp]
0 1
AT2G41560 ACA4 "autoinhibited Ca\(2+\)-ATPase... Potri.016G043100
[exp]
13.22 0.7925
AT5G24490 30S ribosomal protein, putativ... Potri.012G005800
[exp]
13.89 0.8265
AT1G62390 CLMP1, Phox2 Phox2, CLUMPED CHLOROPLASTS 1,... Potri.011G021000
[exp]
16.88 0.7725
AT3G09150 ATHY2, GUN3, HY... GENOMES UNCOUPLED 3, ARABIDOPS... Potri.001G253700
[exp]
20.19 0.8072
AT4G16060 unknown protein Potri.010G006000
[exp]
22.97 0.7543
AT1G80600 WIN1 HOPW1-1-interacting 1 (.1) Potri.017G053500
[exp]
30.33 0.7220
AT1G30520 AAE14 acyl-activating enzyme 14 (.1) Potri.011G164100
[exp]
37.52 0.7683
Potri.016G007450
[exp]
40.65 0.7241
AT5G58770 Undecaprenyl pyrophosphate syn... Potri.001G250900
[exp]
46.73 0.7791
AT4G16745 Exostosin family protein (.1.2... Potri.003G079000
[exp]
52.49 0.7426

Potri.019G108050 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.