Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03500 114 / 2e-26 Ankyrin repeat family protein (.1) AT1G03670 101 / 2e-22 ankyrin repeat family protein (.1) AT4G03460 99 / 1e-21 Ankyrin repeat family protein (.1) AT1G07710 97 / 6e-21 Ankyrin repeat family protein (.1) AT4G03480 89 / 2e-18 Ankyrin repeat family protein (.1) AT4G14390 88 / 5e-18 Ankyrin repeat family protein (.1) AT2G31820 85 / 5e-17 Ankyrin repeat family protein (.1) AT4G05040 82 / 3e-16 ankyrin repeat family protein (.1.2.3.4.5) AT4G03440 80 / 2e-15 Ankyrin repeat family protein (.1) AT4G03450 80 / 2e-15 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G106000 [exp] 810 / 0 AT4G03460 109 / 8e-25 Ankyrin repeat family protein (.1) Potri.019G107700 [exp] 788 / 0 AT4G03500 129 / 2e-31 Ankyrin repeat family protein (.1) Potri.019G107800 [exp] 778 / 0 AT4G03500 129 / 2e-31 Ankyrin repeat family protein (.1) Potri.019G105900 [exp] 776 / 0 AT4G03500 129 / 2e-31 Ankyrin repeat family protein (.1) Potri.019G108000 [exp] 773 / 0 AT4G03500 126 / 3e-30 Ankyrin repeat family protein (.1) Potri.019G108801 [exp] 589 / 0 AT4G03500 101 / 4e-23 Ankyrin repeat family protein (.1) Potri.019G107000 [exp] 514 / 5e-177 AT4G03500 140 / 5e-35 Ankyrin repeat family protein (.1) Potri.019G109150 [exp] 446 / 4e-152 AT4G03500 83 / 1e-16 Ankyrin repeat family protein (.1) Potri.019G108501 [exp] 438 / 4e-152 AT4G03500 87 / 4e-19 Ankyrin repeat family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020209 [exp] 142 / 2e-35 AT1G03670 175 / 6e-47 ankyrin repeat family protein (.1) Lus10013878 [exp] 102 / 2e-23 AT1G03670 112 / 4e-27 ankyrin repeat family protein (.1) Lus10005432 [exp] 97 / 6e-21 AT1G07710 720 / 0.0 Ankyrin repeat family protein (.1) Lus10015224 [exp] 96 / 1e-20 AT1G07710 727 / 0.0 Ankyrin repeat family protein (.1) Lus10008329 [exp] 87 / 9e-18 AT2G31820 854 / 0.0 Ankyrin repeat family protein (.1) Lus10013877 [exp] 80 / 9e-18 ND / Lus10038609 [exp] 81 / 2e-16 AT1G10340 142 / 2e-38 Ankyrin repeat family protein (.1.2) Lus10026833 [exp] 77 / 1e-14 AT4G03500 107 / 4e-04 Ankyrin repeat family protein (.1) Lus10025289 [exp] 72 / 5e-13 AT1G07710 577 / 0.0 Ankyrin repeat family protein (.1) Lus10024440 [exp] 70 / 3e-12 AT1G07710 618 / 0.0 Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [poplar] [flax] Ank PF12796 [poplar] [flax] Ank_2 Ankyrin repeats (3 copies) CL0465 [poplar] [flax] PF13962 [poplar] [flax] PGG Domain of unknown function
Representative CDS sequence Show only first row Show all	>Potri.019G108200.1 pacid=42773907 polypeptide=Potri.019G108200.1.p locus=Potri.019G108200 ID=Potri.019G108200.1.v4.1 annot-version=v4.1 ATGGATTCTTCTGAGAAAATGAATAGCATCACCTATATGGATCCTGTCTTGTACAAGGCAGCACAAAAAGGCAATATCGGTCCCTTTGAGAATTATCAAA CCCGCCTTGATCAGTTATTGACTCCAGACGAGAACACAATTCTTCATGTCTACTTAAGAAACCAAAGCAGTGAACCTGGATTCACTGATTTTGTTGATAA AATTCTTGAAAGGTGTCCACCACTGTTATTCCAAGCCAATAAGAGAGGAGAAACCCCCCTCCATTTGGCAGCAAGATATGGCCATTCCAATGCGGTAAAA GTCCTCATTGACCGTGCAAAAGCTCTACCTGTAGATCCGGAGAGCGGAGTAACAGAAGCAAAAAAGATGCTGAGGATGACCACTGAAGAGCAAGATACAG CGTTGCACGAGGCTGCTCGAAATAGGCGGAGCCATGTGGTGGAAATATTGACAAAAGAGGACCCTGAGTTTTCATATTCCGCCAATGTTCATGGAGAAAC TCCACTTTATATTGCTGCTTCCAGTTGGGGTCAAGAAAAGGTGATCGATGAAATCCTAACTAATTGCATTTCAGTGGACTATGGCGGCCCTAATGGTAGA ACTGCTCTCCATGCGGCAAGCAAGACGGGAGATCATGTTTCAGAGACAGCAAGAAAATTGTTAGAAAAAGAAAAAAAGTTGACGAAAACAACCGATGAGA ACGGCTGGTCACCACTTCACTACGCTGCCTATTATGACTGGTCTGCTCGTACAGTGAAAGTATTACTAGAATATGATGCGTCCGCGGCCTGCATTGCTGA AACAGAGAAGAAGAGAACAGCTCTTCACATTGCTGCCATTCAAGGACATGTAGACACAGTGAAAGAGATTGTTTCTCGATGGCCAGCTTGTTGTGAGCTA GTTGATAACAGAGGTTGGAATGCCCTTCACTATGCTGTGGCCAGTAAAGATATAGAAGCGTTCGAGCAATGTCTGGAGATTCCAGAGCTTGCAAGACTTG GAACGAAGAAGGATGACAAAGGAAACACGCCCTTCCATCTAATTGCTGCTTTAGCACTCAAGGACCAAAACTGGAAACCTGTTCTTTTGCATAGAGAAGG AATATATGGTCTTAATAAGCAAAAGCTAAGCACCATGGACATTTATGAAGGAAATTTTGCAGAGATACAGAAAGAGATCCTAGAATCCCTCGAAGATGTT GGCAGTGGACCGATTGGCCGCGGTCCCTTTGTTTTAAAAGGAGAGGAAGAGAAAAACAATGATGAGGAAAACAAAGAAGAACAGGAAGCTTTGAGTAAAG CAAGAGAGCCTCATCTAGTAGTTGCGGCGTTGATAGCAACGGTAACATTTGCAGCAGCTTTCACCCTACCTGGCGGTTATAAGAGCGACCAAGGTCCAAA TGAAGGCACTGCAATTCTTGCTAAAAAAGCTGCTTTTATAGCATTTGTCATCTCAGATGCAATGTCAATGGTGCTCTCTATTTTAGCTGTCTTTATCCAC TTTTTGATTTCGCTTATTCAAGGTTTGGAAATGGAGAAGAATAAAGAGATAGGTGAGGATACCACTAGGATATTATTTGGGGTTGCCACGTTGTTTACCA TGATTGGCGTGGGCACAATGATTATCGCATTCATCACGGGCACATACGCGGTTCTAGAACCTTCCTTGGAGCTTGCCATCAGCACTTGTCTCATTGGTCT GAGCTTCTTCTTCCTTGTGTATTTAGTCTTTAGGTTCATTTCCAAGGATGTAAGAGATAAGACATCCCGGTGA
AA sequence Show only first row Show all	>Potri.019G108200.1 pacid=42773907 polypeptide=Potri.019G108200.1.p locus=Potri.019G108200 ID=Potri.019G108200.1.v4.1 annot-version=v4.1 MDSSEKMNSITYMDPVLYKAAQKGNIGPFENYQTRLDQLLTPDENTILHVYLRNQSSEPGFTDFVDKILERCPPLLFQANKRGETPLHLAARYGHSNAVK VLIDRAKALPVDPESGVTEAKKMLRMTTEEQDTALHEAARNRRSHVVEILTKEDPEFSYSANVHGETPLYIAASSWGQEKVIDEILTNCISVDYGGPNGR TALHAASKTGDHVSETARKLLEKEKKLTKTTDENGWSPLHYAAYYDWSARTVKVLLEYDASAACIAETEKKRTALHIAAIQGHVDTVKEIVSRWPACCEL VDNRGWNALHYAVASKDIEAFEQCLEIPELARLGTKKDDKGNTPFHLIAALALKDQNWKPVLLHREGIYGLNKQKLSTMDIYEGNFAEIQKEILESLEDV GSGPIGRGPFVLKGEEEKNNDEENKEEQEALSKAREPHLVVAALIATVTFAAAFTLPGGYKSDQGPNEGTAILAKKAAFIAFVISDAMSMVLSILAVFIH FLISLIQGLEMEKNKEIGEDTTRILFGVATLFTMIGVGTMIIAFITGTYAVLEPSLELAISTCLIGLSFFFLVYLVFRFISKDVRDKTSR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G03500			Ankyrin repeat family protein ...		Potri.019G108200 [exp]	0	1
AT4G03500			Ankyrin repeat family protein ...		Potri.019G108501 [exp]	2.82	0.8926
AT4G03500			Ankyrin repeat family protein ...		Potri.019G109150 [exp]	5.47	0.8754
AT5G45540			Protein of unknown function (D...		Potri.015G112012 [exp]	7.41	0.8535
AT1G72125			Major facilitator superfamily ...		Potri.017G145550 [exp]	11.66	0.8250
AT4G34880			Amidase family protein (.1)		Potri.004G171300 [exp]	13.85	0.8693
AT3G48770			DNA binding;ATP binding (.1)		Potri.012G103700 [exp]	22.64	0.7645
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Potri.012G079500 [exp]	25.41	0.7583
AT3G55950		CCR3, ATCRR3	CRINKLY4 related 3 (.1)		Potri.001G252400 [exp]	26.85	0.8292
AT5G45540			Protein of unknown function (D...		Potri.015G116100 [exp]	27.22	0.7947
AT4G03500			Ankyrin repeat family protein ...		Potri.019G108000 [exp]	27.92	0.8106

Compare expression of checked genes

Potri.019G108200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.