Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50150 253 / 1e-78 Plant protein of unknown function (DUF247) (.1) AT3G50120 247 / 2e-76 Plant protein of unknown function (DUF247) (.1) AT3G50170 242 / 2e-74 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G50160 239 / 8e-74 Plant protein of unknown function (DUF247) (.1) AT3G50140 239 / 2e-73 Plant protein of unknown function (DUF247) (.1) AT4G31980 239 / 4e-72 unknown protein AT3G50130 225 / 8e-68 Plant protein of unknown function (DUF247) (.1) AT3G50180 223 / 2e-66 Plant protein of unknown function (DUF247) (.1) AT2G36430 194 / 5e-57 Plant protein of unknown function (DUF247) (.1) AT3G50190 189 / 1e-54 Plant protein of unknown function (DUF247) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G146400 [exp] 465 / 1e-161 AT3G50150 238 / 3e-72 Plant protein of unknown function (DUF247) (.1) Potri.013G146700 [exp] 454 / 2e-158 AT3G50150 233 / 2e-71 Plant protein of unknown function (DUF247) (.1) Potri.013G146300 [exp] 370 / 1e-125 AT4G31980 217 / 1e-63 unknown protein Potri.013G146600 [exp] 353 / 1e-118 AT4G31980 236 / 1e-70 unknown protein Potri.017G145100 [exp] 352 / 2e-118 AT4G31980 225 / 1e-66 unknown protein Potri.018G029800 [exp] 245 / 1e-76 AT4G31980 317 / 1e-101 unknown protein Potri.010G144200 [exp] 239 / 2e-74 AT3G50140 245 / 7e-76 Plant protein of unknown function (DUF247) (.1) Potri.007G047700 [exp] 237 / 2e-72 AT3G50120 721 / 0.0 Plant protein of unknown function (DUF247) (.1) Potri.003G181800 [exp] 234 / 2e-72 AT2G36430 238 / 1e-73 Plant protein of unknown function (DUF247) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039780 [exp] 465 / 2e-162 AT3G50150 280 / 2e-89 Plant protein of unknown function (DUF247) (.1) Lus10039777 [exp] 433 / 3e-150 AT3G50150 272 / 3e-86 Plant protein of unknown function (DUF247) (.1) Lus10038338 [exp] 352 / 6e-118 AT4G31980 251 / 5e-76 unknown protein Lus10038339 [exp] 348 / 4e-116 AT3G50160 230 / 8e-70 Plant protein of unknown function (DUF247) (.1) Lus10010064 [exp] 337 / 7e-112 AT3G50120 214 / 2e-63 Plant protein of unknown function (DUF247) (.1) Lus10010065 [exp] 329 / 7e-109 AT3G50150 240 / 2e-73 Plant protein of unknown function (DUF247) (.1) Lus10004516 [exp] 323 / 1e-106 AT3G50150 234 / 2e-71 Plant protein of unknown function (DUF247) (.1) Lus10011501 [exp] 234 / 1e-71 AT3G50120 716 / 0.0 Plant protein of unknown function (DUF247) (.1) Lus10024948 [exp] 232 / 6e-71 AT4G31980 180 / 2e-49 unknown protein Lus10037762 [exp] 223 / 7e-68 AT3G50140 249 / 6e-77 Plant protein of unknown function (DUF247) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03140 [poplar] [flax] DUF247 Plant protein of unknown function
Representative CDS sequence Show only first row Show all	>Potri.019G108400.2 pacid=42773399 polypeptide=Potri.019G108400.2.p locus=Potri.019G108400 ID=Potri.019G108400.2.v4.1 annot-version=v4.1 ATGGCGGGAGCAAATCCAACTGATCAACAAGAAGGCGGTCAATGGCTGATTAACATCAAAACGCACTTTGCAGACTTAACTCCACTGTCCACAGGTTGGA GCATTTGCAAGGTTCCACGTAAGCTTCGGGATATGAATGCTGGTGCATACAATCCTCAAATTATCTCCATTGGTCCTCTTCACGATGGAACAGACGTCAA TGTGCTGGACATGGAGAAACACAAATGGCACTATGCTCTATCCTTACTTGAACGAACACGTGATGCAGAAAAGACATTAGATGAATGTGGCGAGACCATT CTAAGAAATCATGATGCACTTGTTCGAGCATACTACCCAGGGTCAATTAAACGTGTTTATTCTAATACTGATTTTGCTAAAATGTTATTATTCGATGGTT GCTTTATCCTTGAACTTTTTTTAAGGTTTTCCAGTGATGATGCGAAAAGGCAATATGATCCCATCTTCACGACTTCTTGGATGATCTCAACCCTCCAACG TGATTTGGCGTTGCTAGAAAATCAGATTCCATTTTTTGTTCTTACGGAACTGTACAAACATATAGTGAGGCATACTGCTACGGATCAACCGCGGCTCGTG GAGCTGGCTCTTCGTTTCTTCAGACCAGAGTTGAATACCAATGAAGGAATAGGTGCCGTAATCAGTGGTGGGAATTTCTGTCATTTGCTTGGTCTCTTAC ACACAAGCTACCTACCCTCTTCTCTGAGAGTAGATCAAAGAGGCGGGGCAGGGCCATGGAAACTATTATCTTGTGCAACAGAACTTTGTGCGGCTGGAAT CAAGTTCCAAAAGGATACAACAAAACATCAACTGGATTTGTGTTTCGAAAATGGTGTTTTCAAAATCCCACCATTGCAAATCCACGACTCAACAGATTCA CTCTTCCGGAACCTCATTGCTTTTGAGCAAAGCGTGCAAGGTTGTAGACAATACATGACGTCTTATGCATTACTTATGGATCGTCTTGTTGATACATCAA GTGATGTCGAATTACTTGCGAAAAAGAGAATCATACAAAATGATTTAGGTGGCTATGAAGATGTTACGGATCTGTTTAACAACATTTGCAAGCAGGTAGT TGTGCGAGAATTTAATTTTACCCAATTATGCGAACAAGTGGATGCGTACTATAACAAAAGCTGGCATGGATACAAGGCATCTTTGAAACAAGACTATTTC AAAAACCCATGGACAATTATATCTTTCATTGCTGCGATTGTACTTCTCTCGCTTACTACGTTACAAACCATATACTCGGTGATTTCCTATTATCATAACT AG
AA sequence Show only first row Show all	>Potri.019G108400.2 pacid=42773399 polypeptide=Potri.019G108400.2.p locus=Potri.019G108400 ID=Potri.019G108400.2.v4.1 annot-version=v4.1 MAGANPTDQQEGGQWLINIKTHFADLTPLSTGWSICKVPRKLRDMNAGAYNPQIISIGPLHDGTDVNVLDMEKHKWHYALSLLERTRDAEKTLDECGETI LRNHDALVRAYYPGSIKRVYSNTDFAKMLLFDGCFILELFLRFSSDDAKRQYDPIFTTSWMISTLQRDLALLENQIPFFVLTELYKHIVRHTATDQPRLV ELALRFFRPELNTNEGIGAVISGGNFCHLLGLLHTSYLPSSLRVDQRGGAGPWKLLSCATELCAAGIKFQKDTTKHQLDLCFENGVFKIPPLQIHDSTDS LFRNLIAFEQSVQGCRQYMTSYALLMDRLVDTSSDVELLAKKRIIQNDLGGYEDVTDLFNNICKQVVVREFNFTQLCEQVDAYYNKSWHGYKASLKQDYF KNPWTIISFIAAIVLLSLTTLQTIYSVISYYHN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G50150			Plant protein of unknown funct...		Potri.019G108400 [exp]	0	1
					Potri.019G108500 [exp]	2.44	0.9216
AT5G45540			Protein of unknown function (D...		Potri.015G114101 [exp]	5.91	0.9058
AT4G34480			O-Glycosyl hydrolases family 1...		Potri.004G153800 [exp]	7.00	0.8929
					Potri.015G025701 [exp]	10.19	0.8104
AT4G08850			Leucine-rich repeat receptor-l...		Potri.013G029700 [exp]	11.83	0.8239
AT3G26320		CYP71B36	"cytochrome P450, family 71, s...		Potri.008G184000 [exp]	14.73	0.8011
AT2G44930			Plant protein of unknown funct...		Potri.017G019400 [exp]	16.49	0.8288
					Potri.001G293200 [exp]	17.32	0.8356
AT4G03500			Ankyrin repeat family protein ...		Potri.019G107400 [exp]	17.32	0.8841
AT2G44930			Plant protein of unknown funct...		Potri.017G024866 [exp]	19.74	0.8332

Compare expression of checked genes

Potri.019G108400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.