Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03500 101 / 4e-23 Ankyrin repeat family protein (.1) AT4G03490 90 / 3e-19 Ankyrin repeat family protein (.1.2) AT1G03670 89 / 8e-19 ankyrin repeat family protein (.1) AT4G03480 88 / 1e-18 Ankyrin repeat family protein (.1) AT4G03460 88 / 1e-18 Ankyrin repeat family protein (.1) AT4G14390 86 / 7e-18 Ankyrin repeat family protein (.1) AT4G14400 85 / 2e-17 ACD6 ACCELERATED CELL DEATH 6, ankyrin repeat family protein (.1.2.3) AT4G05040 84 / 4e-17 ankyrin repeat family protein (.1.2.3.4.5) AT1G07710 79 / 1e-15 Ankyrin repeat family protein (.1) AT4G03470 75 / 3e-14 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G106000 [exp] 786 / 0 AT4G03460 109 / 8e-25 Ankyrin repeat family protein (.1) Potri.019G107800 [exp] 583 / 0 AT4G03500 129 / 2e-31 Ankyrin repeat family protein (.1) Potri.019G108200 [exp] 581 / 0 AT4G03500 114 / 2e-26 Ankyrin repeat family protein (.1) Potri.019G105900 [exp] 579 / 0 AT4G03500 129 / 2e-31 Ankyrin repeat family protein (.1) Potri.019G108000 [exp] 575 / 0 AT4G03500 126 / 3e-30 Ankyrin repeat family protein (.1) Potri.019G107700 [exp] 556 / 0 AT4G03500 129 / 2e-31 Ankyrin repeat family protein (.1) Potri.019G109150 [exp] 430 / 1e-148 AT4G03500 83 / 1e-16 Ankyrin repeat family protein (.1) Potri.019G108501 [exp] 414 / 2e-145 AT4G03500 87 / 4e-19 Ankyrin repeat family protein (.1) Potri.019G107000 [exp] 418 / 2e-142 AT4G03500 140 / 5e-35 Ankyrin repeat family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020209 [exp] 144 / 2e-37 AT1G03670 175 / 6e-47 ankyrin repeat family protein (.1) Lus10013878 [exp] 91 / 6e-20 AT1G03670 112 / 4e-27 ankyrin repeat family protein (.1) Lus10026833 [exp] 87 / 2e-18 AT4G03500 107 / 4e-04 Ankyrin repeat family protein (.1) Lus10013877 [exp] 77 / 5e-17 ND / Lus10038609 [exp] 72 / 6e-14 AT1G10340 142 / 2e-38 Ankyrin repeat family protein (.1.2) Lus10005432 [exp] 71 / 8e-13 AT1G07710 720 / 0.0 Ankyrin repeat family protein (.1) Lus10015224 [exp] 70 / 1e-12 AT1G07710 727 / 0.0 Ankyrin repeat family protein (.1) Lus10037894 [exp] 68 / 6e-12 AT1G10340 298 / 3e-93 Ankyrin repeat family protein (.1.2) Lus10008329 [exp] 59 / 4e-09 AT2G31820 854 / 0.0 Ankyrin repeat family protein (.1) Lus10003308 [exp] 55 / 6e-08 AT3G12360 981 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [poplar] [flax] Ank PF12796 [poplar] [flax] Ank_2 Ankyrin repeats (3 copies)
Representative CDS sequence Show only first row Show all	>Potri.019G108801.1 pacid=42773908 polypeptide=Potri.019G108801.1.p locus=Potri.019G108801 ID=Potri.019G108801.1.v4.1 annot-version=v4.1 ATGGGTTCTTCTGAGAAAATGAAACGTATCAGCTATATGGATCCTGTCTTGTTCAAAGCTGCAGCTGAAGGCGATATCGATCCCTTTGAGAAATATCAAA CCTGCCTTGATCAGTTATTGACTCCAGACGAGAACACCATTCTTCATGTCTACTTAGGAAACCAAAGTAGGGAACCGGAACTCACTGATTTTGTTGTTAT AATTCTTGAAATGTGTCCACCACTGTTATTCCAAGCCAATAAGAAAGGTGAAATCCCACTCCATTTGGCAGCAGCATATGGTCATTCCAATGTGGTAAAG GTCCTCATTGACCGTGCCAAAGCTCTACCTACTGATTCAGAGAGCGGAGTAACAGAAGCAAAAAAGATGTTGAGGATGACCAATGAAGAGCAAGATACAG CGTTGCACGAGGCAGCTCGACATAGGCGGAGCCATGTGGTGGAAATATTGACTAAAGAGGACCCTGAGTTTCCATATTCCGCCAATGTTCATGGAGAAAC TCCACTTTATATTGCTGCTTCCATTATCACGAGGTGGAGGGAAGAAGGAGGAAAGGTAGTCGATGGAATCCTCGGAAATTGCATCTCAGTGGACTATGGC GGCCCTAATGGTAGAACTGCTCTAAACGCGGCAATCTGGGTGCGAGATGATGAGACAGCAAGAAAATTGTTAGAAAAAGAAAAGAAATTGACGCAAACAA CCGATGAGAACGGCTGGTCACCACTTCACTACGCTGCCTGTTATGACTGGTCTCCTCGTATAGTGCAAGTATTACTAGAATATGATGCGTCTGCGGCCTA CATAGCTGAAACAGAGAAGAGGAGAACAGCACTTCACATTGCTGCTATTCAAGGACATGTAAACGCAATGAAAGAGATTGTTTCTCGATGTCCAGCTTGT TGTGAGCTAGTTGATAACAGAGGTTGGAATGCCCTTCACTATGCTGTGGCAAGTAAAGATAGAGTAGCATTCGTCCACTGTCTGAAGATTCCAGAGCTTG CAAGACTTGGAACGAAGAAGGATGACAAAGGAAACACGCCCTTCCATCTAATTGCTGCTTTAGCGCACCAGCAGAAGCAATGGCAACGTGTTTTATTTAA CGATAGTTATGGTTATAGTGGAAGGGAGATAAGATGTGGTCTTAATAAGCGACAGCTAAGCGTCGACGACATTTATGATGGAAATTTTGCAGAGATACAG GTAATCAATCCTCTGTGA
AA sequence Show only first row Show all	>Potri.019G108801.1 pacid=42773908 polypeptide=Potri.019G108801.1.p locus=Potri.019G108801 ID=Potri.019G108801.1.v4.1 annot-version=v4.1 MGSSEKMKRISYMDPVLFKAAAEGDIDPFEKYQTCLDQLLTPDENTILHVYLGNQSREPELTDFVVIILEMCPPLLFQANKKGEIPLHLAAAYGHSNVVK VLIDRAKALPTDSESGVTEAKKMLRMTNEEQDTALHEAARHRRSHVVEILTKEDPEFPYSANVHGETPLYIAASIITRWREEGGKVVDGILGNCISVDYG GPNGRTALNAAIWVRDDETARKLLEKEKKLTQTTDENGWSPLHYAACYDWSPRIVQVLLEYDASAAYIAETEKRRTALHIAAIQGHVNAMKEIVSRCPAC CELVDNRGWNALHYAVASKDRVAFVHCLKIPELARLGTKKDDKGNTPFHLIAALAHQQKQWQRVLFNDSYGYSGREIRCGLNKRQLSVDDIYDGNFAEIQ VINPL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G03500			Ankyrin repeat family protein ...		Potri.019G108801 [exp]	0	1
AT4G03460			Ankyrin repeat family protein ...		Potri.019G106000 [exp]	2.00	0.8291
AT4G27810			unknown protein		Potri.012G016700 [exp]	2.82	0.7861
AT4G35880			Eukaryotic aspartyl protease f...		Potri.005G108666 [exp]	7.41	0.7736
AT4G08850			Leucine-rich repeat receptor-l...		Potri.012G124300 [exp]	27.74	0.7762
AT2G18290		EMB2783, APC10	EMBRYO DEFECTIVE 2783, anaphas...		Potri.007G023500 [exp]	58.01	0.7195
AT2G16910	bHLH	AMS, bHLH021	ABORTED MICROSPORES, basic hel...		Potri.010G041500 [exp]	59.49	0.6837
AT3G15355		UBC25 ,PFU1	PHO2 FAMILY UBIQUITIN CONJUGAT...		Potri.008G104400 [exp]	68.84	0.7278
AT3G02100			UDP-Glycosyltransferase superf...		Potri.013G022800 [exp]	74.89	0.7431
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Potri.004G023700 [exp]	79.81	0.7530
					Potri.008G112066 [exp]	79.94	0.7282

Compare expression of checked genes

Potri.019G108801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.