Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20810 838 / 0 GAUT10, LGT4 galacturonosyltransferase 10 (.1) AT1G18580 550 / 0 GAUT11 galacturonosyltransferase 11 (.1) AT5G47780 464 / 4e-158 GAUT4 galacturonosyltransferase 4 (.1) AT3G61130 452 / 1e-152 GAUT1, LGT1 galacturonosyltransferase 1 (.1) AT4G38270 426 / 3e-142 GAUT3 galacturonosyltransferase 3 (.1.2) AT3G25140 407 / 1e-136 QUA1, GAUT8 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT3G02350 386 / 2e-128 GAUT9 galacturonosyltransferase 9 (.1) AT2G46480 358 / 8e-118 GAUT2, LGT2 galacturonosyltransferase 2 (.1) AT3G01040 310 / 2e-99 GAUT13 galacturonosyltransferase 13 (.1.2) AT2G30575 310 / 3e-98 GAUT5, LGT5 GALACTURONOSYLTRANSFERASE 5, los glycosyltransferase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G146200 [exp] 943 / 0 AT2G20810 820 / 0.0 galacturonosyltransferase 10 (.1) Potri.015G060800 [exp] 567 / 0 AT1G18580 850 / 0.0 galacturonosyltransferase 11 (.1) Potri.012G064500 [exp] 555 / 0 AT1G18580 846 / 0.0 galacturonosyltransferase 11 (.1) Potri.016G001700 [exp] 453 / 2e-153 AT5G47780 885 / 0.0 galacturonosyltransferase 4 (.1) Potri.002G151400 [exp] 446 / 4e-150 AT3G61130 1017 / 0.0 galacturonosyltransferase 1 (.1) Potri.014G073800 [exp] 446 / 4e-150 AT3G61130 1011 / 0.0 galacturonosyltransferase 1 (.1) Potri.004G206000 [exp] 439 / 3e-147 AT4G38270 881 / 0.0 galacturonosyltransferase 3 (.1.2) Potri.006G001100 [exp] 427 / 5e-144 AT5G47780 776 / 0.0 galacturonosyltransferase 4 (.1) Potri.002G246500 [exp] 407 / 2e-136 AT3G25140 912 / 0.0 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018554 [exp] 913 / 0 AT2G20810 872 / 0.0 galacturonosyltransferase 10 (.1) Lus10007979 [exp] 566 / 0 AT1G18580 845 / 0.0 galacturonosyltransferase 11 (.1) Lus10013506 [exp] 563 / 0 AT1G18580 843 / 0.0 galacturonosyltransferase 11 (.1) Lus10039784 [exp] 501 / 7e-177 AT2G20810 459 / 1e-160 galacturonosyltransferase 10 (.1) Lus10041389 [exp] 452 / 4e-153 AT3G61130 1020 / 0.0 galacturonosyltransferase 1 (.1) Lus10009311 [exp] 451 / 3e-152 AT3G61130 1018 / 0.0 galacturonosyltransferase 1 (.1) Lus10036540 [exp] 451 / 5e-151 AT3G61130 1015 / 0.0 galacturonosyltransferase 1 (.1) Lus10038739 [exp] 447 / 1e-150 AT5G47780 904 / 0.0 galacturonosyltransferase 4 (.1) Lus10026546 [exp] 446 / 2e-145 AT4G38270 899 / 0.0 galacturonosyltransferase 3 (.1.2) Lus10011834 [exp] 406 / 4e-136 AT3G25140 949 / 0.0 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF01501 [poplar] [flax] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Potri.019G108900.1 pacid=42773846 polypeptide=Potri.019G108900.1.p locus=Potri.019G108900 ID=Potri.019G108900.1.v4.1 annot-version=v4.1 ATGAGGAGGAGACCAGTGGACTTTAGGAGGCCAGTGAGGAGGAGGATATCAAGTGTGGTGTGGTGGACTTTGTGTGGTATATCTGTGTTGCTGTTTATAG TTATTTTTAGCAAAGAGAGTCGTATTGAATCAAGATCCACCAGCTTTAATAAGTACTATACCAAGTATGAGAAAAACATTGAAGGCCTAAACATTACAGA TGAAATGTTGAGCCCCAACTCAATCACCAGGCAACTTAGTGACCAAATTTCTCTTGCAAAAGCTTTTGTTGTGATTGCAAAAGAAAGTAACAATCTTCAG TTTGCTTGGGAATTAAGTGCCCAAATCCGCAATTCCCAGGTCCTCCTTTCAAGCGCCGCAACGAGGCGAGCTCCTTTAACAACCAGGGAATCAGAAACTG CTATCCGTGACATGGCACTTTTGCTCTTCCAAGCCCAGCAACTTCATTATGATAGTGCAACTATGATTATGAGACTGAAAGCCAAAATCCAAGTTCTTGA CGAACAAATGGGTATTGTGAATGAGAAAAGCTCTAAGTATGGTCAAATAGCTGCTGAAGAAATCCCAAAAGGACTTTACTGCATTGGTATTCGGCTAACT ACTGAATGGTTTGGAAATCCAAATCTACAGAGAAAAAAGAATGAGAGAATGCAAATTCAGACAAAACTTAGAGATAGCAACCTCTATCATTTCTGCGTCT TCTCTGACAATATCCTTGCAACTTCAGTTGTTGTCAATTCAACTGCTTTAAATTCCAAGAATCCAGATATGGTTGTGTTTCATCTTGTAACTGATGAAAT AAACTACATCGCAATGAAGGCTTGGTTTGCCATGAACACTTTCCGAGGAGTTACTGTTGAGGTTCAGAAGTTTGAAGACTTTAAATGGCTAAATGCTTCT TATGTTCCAGTGCTTAAGCAGCTCCAAGACTCTGAAACTCAAAGCTATTACTTTTCAGGCCATAATGATGATGGCCGGACTCCAATCAAGTTCCGGAACC CAAAATATCTATCTATGCTTAATCACCTCAGATTTTATATTCCTGAAGTTTTCCCTGCATTGAAGAAGGTGGTATTTCTTGATGATGATGTAGTTGTTCA GAAAGATTTATCTGGTCTATTTTCAGTTGACTTGAACAGCAACGTTAATGGAGCAGTTGAGACATGCATGGAGACATTTCACAGATACCACAAGTACCTG AACTACTCTCACCCTCTTATTAGAGAACATTTTGATCCTGATGCGTGTGGTTGGGCATTTGGAATGAATGTTTTTGATTTGGTTGAGTGGAGGAAGCGAA ATGTAACTGAAATCTACCACTACTGGCAAGAAAAGAATGTGGATCGGACACTCTGGAAACTTGGAACACTACCTCCTGGGCTTTTGACTTTCTATGGGTT GACAGAGCCATTAGATCCCTCATGGCATGTGTTGGGATTGGGCTATACAAATGTTGATCCTCACTTGATAGAGAAAGGGGCAGTGTTGCACTTCAATGGA AACTCCAAGCCATGGTTGAAAATTGGGATGGAAAAATACAAGCCTCTTTGGGAAAAGCACGTAGATTACAGTCATCCTTTATTACAACAGTGCAATTTTC ATTGA
AA sequence Show only first row Show all	>Potri.019G108900.1 pacid=42773846 polypeptide=Potri.019G108900.1.p locus=Potri.019G108900 ID=Potri.019G108900.1.v4.1 annot-version=v4.1 MRRRPVDFRRPVRRRISSVVWWTLCGISVLLFIVIFSKESRIESRSTSFNKYYTKYEKNIEGLNITDEMLSPNSITRQLSDQISLAKAFVVIAKESNNLQ FAWELSAQIRNSQVLLSSAATRRAPLTTRESETAIRDMALLLFQAQQLHYDSATMIMRLKAKIQVLDEQMGIVNEKSSKYGQIAAEEIPKGLYCIGIRLT TEWFGNPNLQRKKNERMQIQTKLRDSNLYHFCVFSDNILATSVVVNSTALNSKNPDMVVFHLVTDEINYIAMKAWFAMNTFRGVTVEVQKFEDFKWLNAS YVPVLKQLQDSETQSYYFSGHNDDGRTPIKFRNPKYLSMLNHLRFYIPEVFPALKKVVFLDDDVVVQKDLSGLFSVDLNSNVNGAVETCMETFHRYHKYL NYSHPLIREHFDPDACGWAFGMNVFDLVEWRKRNVTEIYHYWQEKNVDRTLWKLGTLPPGLLTFYGLTEPLDPSWHVLGLGYTNVDPHLIEKGAVLHFNG NSKPWLKIGMEKYKPLWEKHVDYSHPLLQQCNFH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G20810		GAUT10, LGT4	galacturonosyltransferase 10 (...		Potri.019G108900 [exp]	0	1
AT4G09810			Nucleotide-sugar transporter f...		Potri.005G196500 [exp]	7.14	0.7175
AT3G05530		ATS6A.2, RPT5A	regulatory particle triple-A A...		Potri.005G025100 [exp]	7.21	0.7294	Pt-RPT5.1
AT1G06070	bZIP	AtbZIP69	Basic-leucine zipper (bZIP) tr...		Potri.007G130800 [exp]	16.30	0.6339
AT1G07420		SMO2-1, ATSMO1,...	Arabidopsis thaliana sterol 4-...		Potri.009G037400 [exp]	16.97	0.7108	Pt-SMO2.2
AT3G18040		ATMPK9	MAP kinase 9 (.1.2)		Potri.015G040300 [exp]	19.33	0.6149	MPK8.2
AT1G48635		PEX3-2, PEX3	PEROXIN 3-2, peroxin 3 (.1.2)		Potri.015G041700 [exp]	21.67	0.6842	PP2.5
AT1G58110	bZIP		Basic-leucine zipper (bZIP) tr...		Potri.003G014800 [exp]	23.51	0.5869
AT4G22580			Exostosin family protein (.1)		Potri.001G120800 [exp]	33.04	0.6010
AT2G38610			RNA-binding KH domain-containi...		Potri.016G140800 [exp]	41.35	0.6468
AT5G10990			SAUR-like auxin-responsive pro...		Potri.004G164300 [exp]	43.74	0.6461

Compare expression of checked genes

Potri.019G108900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.