Plant FIBer expression Database

Potri.019G109200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G145900
[exp]
662 / 0 ND /
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018556
[exp]
152 / 8e-41 ND /
Lus10039787
[exp]
150 / 7e-40 ND /
PFAM info
Representative CDS sequence
>Potri.019G109200.1 pacid=42774156 polypeptide=Potri.019G109200.1.p locus=Potri.019G109200 ID=Potri.019G109200.1.v4.1 annot-version=v4.1
ATGGCTGCGGGAGGAGCCCACAAAGGAAATGGTAATGGAAATAGAGGAAGGCCGTATGGGTTGATGCTGCTTTTAGCATTTGGGGCTGCTTTGCTTGGTG
TTATGGTGCTACATAAGTTCAGAGAGAGACGCATCTTCAACCTCCTTGTCAAAGAGAAGGATCGTGAGCTCATGTCCCTCCAGCTTATCTTGCAGAAGGA
AAGAGAACGCAGCAAAGAAATGAAAAGAAAGGCAGAAGAGATGAAAGGGAAGATATACTCTCTAAGAACCCAAAAGATGGAGCTTGACAGGAGGCAGCTG
GAGATGCAGTCCACAATTGATTCCATAAAGGATGAACAAAAGATTATGGAGTCTGCCCTCGAGGAGAAGCAAAATGAGATCAAAATGCTAAGAGAGATGA
ACATTGATGCAGATAAAGGAAACCTTCAAATGGCGGATCTTATAGAAAGTCTGAAACAAAAGGAAGCTGAAATTGAGGAATTGAAGCACCACCTTGAATA
CCCAGCTAAGAAATGGTCAGTGAGCACAGACGACCCATCAAGCCCACCCATAAACATGACTGTATCCTTAAACATGGTAAACGAGGGTAACATAGAAGTC
GATAAGAGTAAAGAAGAGGAGGTTCAATTGCATGAAACTGCATATGATGGCAATGGTTTGGATTCAAGGGGCAATGGAGGCAACTCTACTTCCACCAATC
TAGAAAAGCAGGGTGATACTGCCATAGTTGAAAATGCAAGTGAAAGCAGGGTAGGCATTGCAGACAGGAGAGAAGTGTCAGAGGAAAAGGAATCACAGAA
ACTTGATGGATCTAGAAATGGAAGTTCCATTGGCATTGATAAGGATCAAGAGTATGAAAATGAAAGTTCTCAAGGGAAGCGTGCTTCTGGTGCAGGAGAG
GAAAATAACACTTCAAATGCAACCGAGACAATTGTCAGCAGAATCGGAAGAGCATCAAAAACTGCTGATGCACATAATGATGAGAAATCAAGGGATAGAG
AAGAGCATAAATTTAACCTAGATGGGCAACCTGGGCTTGAAAATGTTCAGGAGGCAGAAGATCGTCAAGAAACATTAAGAGGTGGTGCGAAGCGGGAAAT
GGTGGATAACTCCAGAAGTAGGGGGAACGAGAGGTACCACCATGCTAGCAGAGTACGAGGAAAGAGAAGGACAGTGGTTGCCAAGAATAGGCTGCTGGAG
AGCAGAAATGATGTAAACAATGTTGCTGAGAAGACAAGAAATAGAAAATTTCCTATGGATGATCAAGGTAGACTGATATACAGAGAAGGGGGAAGAGCAT
CTATTGATGGAACAACAGAAGAAATAACAAAGGCAGTAGGTTCTTCTAAAACCAAATCAATAGAGCATCAAAACCATGAAGACTCTAAGGACCTGGAAAA
CAAACTTGGGGAAGATCGACAAAACCAGCAGATGAGTGAAGTCCATGAGACAATGAAAAGGCTCCCAGTAGCTCATGACGCCAAAGTGCTGACAAATGGA
AGCCTTGATGGCCAGCTCAGTAACATCAGAAGCAATGACAGAAAACAGAGCCTGGATGAAGATCAACAACAAGCCAGGGGCACAGAAGAAAGCCGAAACA
GTAGCAATATGAACACTAAAAAAAACAGTGATGAACAAGTGATAAATATCAGCAAGCATGAAAGGCAAGAACAAATGGAGGATTCAGATGTAGAACACAA
GACCGATGCAGATTCTGGAGATTTTTACAAGGAATCAGTTTCTGATTTAGAAGAGGATAAAGAAGAGTACAGAGAGGAAACTGATGAGTCCGACTTCTAG
AA sequence
>Potri.019G109200.1 pacid=42774156 polypeptide=Potri.019G109200.1.p locus=Potri.019G109200 ID=Potri.019G109200.1.v4.1 annot-version=v4.1
MAAGGAHKGNGNGNRGRPYGLMLLLAFGAALLGVMVLHKFRERRIFNLLVKEKDRELMSLQLILQKERERSKEMKRKAEEMKGKIYSLRTQKMELDRRQL
EMQSTIDSIKDEQKIMESALEEKQNEIKMLREMNIDADKGNLQMADLIESLKQKEAEIEELKHHLEYPAKKWSVSTDDPSSPPINMTVSLNMVNEGNIEV
DKSKEEEVQLHETAYDGNGLDSRGNGGNSTSTNLEKQGDTAIVENASESRVGIADRREVSEEKESQKLDGSRNGSSIGIDKDQEYENESSQGKRASGAGE
ENNTSNATETIVSRIGRASKTADAHNDEKSRDREEHKFNLDGQPGLENVQEAEDRQETLRGGAKREMVDNSRSRGNERYHHASRVRGKRRTVVAKNRLLE
SRNDVNNVAEKTRNRKFPMDDQGRLIYREGGRASIDGTTEEITKAVGSSKTKSIEHQNHEDSKDLENKLGEDRQNQQMSEVHETMKRLPVAHDAKVLTNG
SLDGQLSNIRSNDRKQSLDEDQQQARGTEESRNSSNMNTKKNSDEQVINISKHERQEQMEDSDVEHKTDADSGDFYKESVSDLEEDKEEYREETDESDF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.019G109200
[exp]
0 1
Potri.005G193800
[exp]
15.49 0.7340
AT1G32583 unknown protein Potri.012G102900
[exp]
16.88 0.5730
AT4G01240 S-adenosyl-L-methionine-depend... Potri.004G116900
[exp]
17.08 0.7770
AT2G16230 O-Glycosyl hydrolases family 1... Potri.014G184600
[exp]
18.16 0.7604
AT1G55580 GRAS SCL18, LAS SCARECROW-LIKE 18, Lateral Sup... Potri.012G020200
[exp]
19.07 0.7508 Pt-LAS.3
AT5G42720 Glycosyl hydrolase family 17 p... Potri.014G183000
[exp]
24.28 0.7493
AT3G11690 unknown protein Potri.006G200100
[exp]
28.80 0.7186
AT4G27190 NB-ARC domain-containing disea... Potri.001G416900
[exp]
29.22 0.6072
AT5G64700 nodulin MtN21 /EamA-like trans... Potri.001G307800
[exp]
29.39 0.6715 N21L9
AT2G20430 RIC6 ROP-interactive CRIB motif-con... Potri.002G035500
[exp]
37.73 0.7282

Potri.019G109200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.