Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62460 157 / 1e-46 RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G02960 155 / 2e-46 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) AT3G47550 155 / 5e-46 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) AT1G14260 148 / 1e-43 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT2G01275 120 / 1e-32 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT5G38070 116 / 3e-31 RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G02610 92 / 2e-22 RING/FYVE/PHD zinc finger superfamily protein (.1) AT4G02075 86 / 4e-20 PIT1 pitchoun 1, RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G45530 55 / 1e-08 RING/U-box superfamily protein (.1) AT4G32670 55 / 1e-08 RING/FYVE/PHD zinc finger superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G126600 [exp] 448 / 8e-162 AT2G02960 159 / 9e-48 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Potri.010G169200 [exp] 179 / 3e-55 AT3G47550 253 / 6e-84 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Potri.008G086300 [exp] 175 / 5e-54 AT2G02960 252 / 9e-84 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Potri.004G093500 [exp] 139 / 5e-40 AT2G01275 238 / 9e-79 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.010G115600 [exp] 132 / 2e-37 AT2G01275 248 / 1e-82 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.017G122300 [exp] 127 / 8e-36 AT2G01275 246 / 4e-82 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.008G127400 [exp] 118 / 6e-32 AT2G01275 266 / 1e-89 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.002G196600 [exp] 91 / 5e-22 AT1G02610 183 / 2e-58 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.014G121900 [exp] 91 / 6e-22 AT1G02610 181 / 2e-57 RING/FYVE/PHD zinc finger superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012826 [exp] 174 / 2e-53 AT2G02960 310 / 2e-106 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Lus10036754 [exp] 168 / 3e-51 AT2G02960 315 / 1e-108 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Lus10037172 [exp] 164 / 1e-49 AT2G02960 303 / 5e-104 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Lus10021670 [exp] 162 / 1e-48 AT3G47550 275 / 7e-92 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Lus10034454 [exp] 159 / 1e-47 AT3G47550 296 / 8e-101 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Lus10019102 [exp] 156 / 2e-46 AT3G47550 295 / 5e-100 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Lus10035010 [exp] 151 / 2e-44 AT3G47550 284 / 8e-96 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Lus10030472 [exp] 148 / 5e-43 AT2G02960 221 / 4e-79 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Lus10004058 [exp] 145 / 2e-42 AT2G01275 251 / 6e-84 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10002282 [exp] 142 / 3e-41 AT5G38070 219 / 6e-71 RING/FYVE/PHD zinc finger superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12428 [poplar] [flax] DUF3675 Protein of unknown function (DUF3675) CL0229 [poplar] [flax] RING PF12906 [poplar] [flax] RINGv RING-variant domain
Representative CDS sequence Show only first row Show all	>Potri.019G111700.1 pacid=42773154 polypeptide=Potri.019G111700.1.p locus=Potri.019G111700 ID=Potri.019G111700.1.v4.1 annot-version=v4.1 ATGGTTGATGATTTGATGGTGTGTGTAGACAGAATCATAGTGGCCTCAAGTTGTTTTGAGCCAGTTAATAATGGAGAAAGAGAAAGAAATGGTAGTGATG TTGTTGGAGTTGAAGCAACAAGTAAGGATGGTAATGTGAAAGAGAGTGTTGGTTCTGTGAAAGGAAACGAAGAAGGGTCTTCATGTTCTTTGAAGAAAGT AGAGATGGTTGAATGTAGGATATGTCAAGAGGAAGATGAGGTTCTTGCTTTGGAAGCTCCTTGTTCTTGTAATGGCACCCTCAAGTTTGCTCATAGAAAG TGCATTCAGAGATGGTGCAACAAAAAAGGTGACATTACCTGTGAAATCTGCAATCAGGTTTTCTCACCAAATTATTCCCTTCCACCAGCCCGCAGCAATC CTGATGTTATAGCAATTGATATAAGGCAAGCGTGGGGCCACCACATTGATCTGCATGATTCTCATCTTCTAGCTCTTGAACATCAATTGCTGCAATCAGA GTATGAGGATTATGCTGTCACTAATACAAGCAGCCTTGCTTGTCTTCGTTCTGTTGCTCTCATTTTGCTTATAATCTTGCTACTCCGCCAAGCTCTAATG GTTACAAGGGATTCAGGGATGGTGCAAGAAACGTCATCATTCTTTGGTTTTCAGATTTCGCTTCTTCAATTCGCTGGTTTTCTTTTGCCATGCTATGTGA TGGCCCGCTCTTGGTACATTGCGCAAAGCCGAAGGAGGAGACATGGTTAA
AA sequence Show only first row Show all	>Potri.019G111700.1 pacid=42773154 polypeptide=Potri.019G111700.1.p locus=Potri.019G111700 ID=Potri.019G111700.1.v4.1 annot-version=v4.1 MVDDLMVCVDRIIVASSCFEPVNNGERERNGSDVVGVEATSKDGNVKESVGSVKGNEEGSSCSLKKVEMVECRICQEEDEVLALEAPCSCNGTLKFAHRK CIQRWCNKKGDITCEICNQVFSPNYSLPPARSNPDVIAIDIRQAWGHHIDLHDSHLLALEHQLLQSEYEDYAVTNTSSLACLRSVALILLIILLLRQALM VTRDSGMVQETSSFFGFQISLLQFAGFLLPCYVMARSWYIAQSRRRRHG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G02960			RING/FYVE/PHD zinc finger supe...		Potri.019G111700 [exp]	0	1
AT4G35300		TMT2	tonoplast monosaccharide trans...		Potri.005G255400 [exp]	4.00	0.7530
AT5G14230			unknown protein		Potri.001G333600 [exp]	9.94	0.7405
AT3G47570			Leucine-rich repeat protein ki...		Potri.008G033900 [exp]	14.00	0.7251
AT3G43120			SAUR-like auxin-responsive pro...		Potri.018G132400 [exp]	16.12	0.7206
AT3G01860			unknown protein		Potri.008G176300 [exp]	20.19	0.6961
AT2G38120		MAP1, WAV5, PIR...	WAVY ROOTS 5, MODIFIER OF ARF7...		Potri.016G113600 [exp]	23.04	0.6885	AUX1.1
AT5G17920		ATCIMS, ATMETS,...	methionine synthesis 1, COBALA...		Potri.013G061800 [exp]	23.87	0.7120	Pt-CIMS.2
AT3G51000			alpha/beta-Hydrolases superfam...		Potri.004G039700 [exp]	25.69	0.6778
AT1G23460			Pectin lyase-like superfamily ...		Potri.011G159000 [exp]	30.75	0.6775
AT4G10550			Subtilase family protein (.1.2...		Potri.011G146300 [exp]	33.04	0.6756

Compare expression of checked genes

Potri.019G111700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.